Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq119667 96.9 3e-15 seq127998 93.3 4e-14 seq98341 93.3 4e-14 seq149515 91.5 1e-13 seq143705 91.5 1e-13 seq99093 87.8 2e-12 seq49698 84.2 2e-11 >seq119667 Length=392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 |||| ||||| |||||| | || || | || || |||||||||||| || ||| Sbjct 18 GTAAGGATGCAGATATTCGTGAAGACGCTAACCGGGAAAACCATTACCCTTGAGGTGGAG 77 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 ||| | || || | | | || | ||| || ||| || || ||||| | || Sbjct 78 CCCTCTGATACTATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATCCCGCCC 137 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || |||||| | ||||||||||| || ||||| || |||||| || || |||| Sbjct 138 GACCAACAACGCCTTATCTTTGCCGGGAAACAGCTAGAAGATGGTCGTACCCTGAGCGAT 197 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||||| || ||||| | || | || |||| ||||| Sbjct 198 TACAATATTCAGAAGGAATCCACCCTTCATCTTGTTCTTCGTCTACGTGGAGG 250 >seq127998 Length=685 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || |||||||| |||| || ||||| ||||| ||||||||| Sbjct 567 GATAAGGAAGGTATTCCTCCTGATCAACAGCGACTCATTTTTGCAGGCAAGCAACTGGAA 508 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || ||| | | |||||||| || ||||| ||||| ||||||||| | ||||| Sbjct 507 GATGGCAGAACACTTTCTGATTACAACATACAGAAAGAATCCACTCTTCACCTTGTGTT 449 >seq98341 Length=429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || |||||||| |||| || ||||| ||||| ||||||||| Sbjct 41 GATAAGGAAGGTATTCCTCCTGATCAACAGCGACTCATTTTTGCAGGCAAGCAACTGGAA 100 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || ||| | | |||||||| || ||||| ||||| ||||||||| | ||||| Sbjct 101 GATGGCAGAACACTTTCTGATTACAACATACAGAAAGAATCCACTCTTCACCTTGTGTT 159 >seq149515 Length=449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| |||| ||||||||||||||| ||| ||||| Sbjct 17 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 76 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||| ||| || || || ||||| | ||| ||| ||| Sbjct 77 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 136 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || ||||| || || ||||| |||| ||| ||| || ||| || ||| Sbjct 137 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 196 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| ||||| |||||| | |||||||| Sbjct 197 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACG 231 >seq143705 Length=477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| |||| ||||||||||||||| ||| ||||| Sbjct 437 ATGCAGATTTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 378 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||| ||| || || || ||||| | ||| ||| ||| Sbjct 377 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 318 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || ||||| || || ||||| |||| ||| ||| || ||| || ||| Sbjct 317 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 258 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| ||||| |||||| | |||||||| Sbjct 257 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACG 223 >seq99093 Length=221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| || ||||||||||| | || ||| ||||||||| | || ||||| Sbjct 59 AAGCAAAAA-TTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCA 117 Query 29100 GGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTA 29157 || |||||| | |||||| | | | ||| | ||||| |||||||| || ||||| | Sbjct 118 GGTAAACAATTAGAAGATGGACGTACATTAT--CTGATTATAATATTCAAAAAGAATCGA 175 Query 29158 CTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| |||| ||| | | ||||| || Sbjct 176 CTCTTCACTTGGTATTAAGGCTTCGAGGTGG 206 >seq49698 Length=220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || || | |||||||| |||||||| ||||| ||| || || |||| Sbjct 13 AGATCAGCAGAGGTTGATCTTTGCAGGCAAACAGCTGGAGGATGGTCGTACCCTGTCCGA 72 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||||||||||||||| ||| ||||| | || || ||||||| Sbjct 73 CTACAACATCCAGAAGGAATCTACTCTGCACTTGGTGCTCCGCCTAAGAGGAGG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427015106545340