Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq44199 150 2e-31 seq43933 143 3e-29 seq43932 123 3e-23 seq96271 93.3 5e-14 seq96269 93.3 5e-14 >seq44199 Length=311 Score = 150 bits (166), Expect = 2e-31 Identities = 215/300 (72%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 145795 GCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAG 145854 || |||||||||||||| |||| ||||| || | |||||||||||||| | ||||||| Sbjct 311 GCGATGTTGAAGGGCACGCCCAAGCCCATATCACACGAGCGCTGGTACATCAGGCAGGAC 252 Query 145855 AGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCG 145914 || || ||| || || ||||||||||| | | ||| || || |||| |||||| | Sbjct 251 AGTTCACCGTTGGCAACATAGAACTGGCAGAACATGTGACACGGGGGCAACGCCATGAGG 192 Query 145915 GGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCT-CTT 145973 ||| ||||| || |||||||| | || | || | | | || ||| || | ||| Sbjct 191 TGCAAATCCGCAGGATTCCAGGCTGACAGAAGGATACGAC-GATCAGTGGGATCTTCCTT 133 Query 145974 GATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA 146033 ||||| || || || ||||| ||||||||||| || ||| || || | Sbjct 132 GATCTTCCGGATGCACTCGGCCAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCAT 73 Query 146034 GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCC 146093 |||| |||| ||||| ||||| | ||||||||| |||||||| || |||||||| || Sbjct 72 GTCCTGGTACTTCGCCCCAAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCC 13 >seq43933 Length=829 Score = 143 bits (158), Expect = 3e-29 Identities = 195/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 145996 AGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAG 146055 ||||| ||||||||||| || ||| || || | |||| |||| ||||| ||| Sbjct 30 AGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAAG 89 Query 146056 TGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCG 146115 || | ||||||||| |||||||| || |||||||| || ||| | || |||| ||| Sbjct 90 TGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCCG 149 Query 146116 GCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAG 146175 | | | ||||| || || || |||||||| ||||| ||| | || ||| || ||| Sbjct 150 CGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCCTTCTCGGTC 209 Query 146176 AGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTC 146235 | | |||| || || || |||||||||| |||| ||||| || ||||| | | Sbjct 210 AAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCACGC 269 Query 146236 CAGAAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267 |||||||| | |||||| ||||| || ||||| Sbjct 270 CAGAAGACGCGCTTGGTCGTCAGTAGTGGGAA 301 >seq43932 Length=221 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 |||| |||||||||| || || || |||||||||||||| |||| ||||| || | Sbjct 6 CATGCAGGTCAGCAGAGAATAAGATGCGATGTTGAAGGGCACGCCCAAGCCCATATCACA 65 Query 145830 CGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAG 145889 |||||||||||||| | ||||||| || || ||| || || ||||||||||| | | Sbjct 66 CGAGCGCTGGTACATCAGGCAGGACAGTTCACCGTTGGCAACATAGAACTGGCAGAACAT 125 Query 145890 GTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937 ||| || || |||| |||||| | ||| ||||| || |||||||| Sbjct 126 GTGACACGGGGGCAACGCCATGAGGTGCAAATCCGCAGGATTCCAGGC 173 >seq96271 Length=453 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 |||||||| |||| | || | ||| || | || || || || || ||||| ||| Sbjct 210 AGCTGGAGTTTCAAAGCTTCAATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGG 151 Query 145732 ATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAG 145791 | ||||| || |||| | || || || || | || | | ||||| ||||| || Sbjct 150 ACAAAGTCACCAGGCTTTAACCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAA 91 Query 145792 CTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 ||||| ||||| ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 90 CTGGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAA 31 Query 145852 GAGAGCTCCCC 145862 |||||||| || Sbjct 30 GAGAGCTCTCC 20 >seq96269 Length=446 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 |||||||| |||| | || | ||| || | || || || || || ||||| ||| Sbjct 237 AGCTGGAGTTTCAAAGCTTCAATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGG 296 Query 145732 ATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAG 145791 | ||||| || |||| | || || || || | || | | ||||| ||||| || Sbjct 297 ACAAAGTCACCAGGCTTTAACCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAA 356 Query 145792 CTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 ||||| ||||| ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 357 CTGGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAA 416 Query 145852 GAGAGCTCCCC 145862 |||||||| || Sbjct 417 GAGAGCTCTCC 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588210475593120