Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq99093 96.9 3e-15 seq149515 91.5 1e-13 seq143705 91.5 1e-13 seq119667 87.8 1e-12 seq95674 86.0 5e-12 seq24851 86.0 5e-12 seq99092 84.2 2e-11 >seq99093 Length=221 Score = 96.9 bits (106), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || ||||||||||| | || ||| ||||||||| | || ||||| Sbjct 59 AAGCAAAAA-TTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCA 117 Query 25173 GGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 || |||||||| |||||| | | | ||| | ||||| ||||||||||| ||||| | Sbjct 118 GGTAAACAATTAGAAGATGGACGTACATTAT--CTGATTATAATATTCAAAAAGAATCGA 175 Query 25231 CTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| |||| ||| | | ||||| || Sbjct 176 CTCTTCACTTGGTATTAAGGCTTCGAGGTGG 206 >seq149515 Length=449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| |||| ||||||||||||||| ||| ||||| Sbjct 17 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 76 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | ||| ||| || || || ||||| | ||| ||| ||| Sbjct 77 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 136 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || ||||| || || ||||| ||||| ||| ||| || ||| || ||| Sbjct 137 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 196 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||| ||||| |||||| | |||||||| Sbjct 197 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACG 231 >seq143705 Length=477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| |||| ||||||||||||||| ||| ||||| Sbjct 437 ATGCAGATTTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 378 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | ||| ||| || || || ||||| | ||| ||| ||| Sbjct 377 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 318 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || ||||| || || ||||| ||||| ||| ||| || ||| || ||| Sbjct 317 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 258 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||| ||||| |||||| | |||||||| Sbjct 257 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACG 223 >seq119667 Length=392 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 25029 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 25088 |||| ||||| |||||| | || || | || || |||||||||||| || ||| Sbjct 18 GTAAGGATGCAGATATTCGTGAAGACGCTAACCGGGAAAACCATTACCCTTGAGGTGGAG 77 Query 25089 CCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 25148 ||| | || || | | | || | ||| || ||| || || ||||| | || Sbjct 78 CCCTCTGATACTATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATCCCGCCC 137 Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || |||||| | ||||||||||| || ||||| | |||||| || || |||| Sbjct 138 GACCAACAACGCCTTATCTTTGCCGGGAAACAGCTAGAAGATGGTCGTACCCTGAGCGAT 197 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||| |||||||| || ||||| | || | || |||| ||||| Sbjct 198 TACAATATTCAGAAGGAATCCACCCTTCATCTTGTTCTTCGTCTACGTGGAGG 250 >seq95674 Length=384 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||||||||| || || || ||||| ||||| || |||||||| | || || | || Sbjct 166 AGATCAACAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACGTTGTCTGA 225 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||| |||||||||||||| ||||||||| ||||| | || | | |||||| Sbjct 226 TTACAACATTCAAAAGGAATCCACTCTTCACCTGGTGCTGCGTCTTAGGGGAGGG 280 >seq24851 Length=429 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||||||||| || || || ||||| ||||| || |||||||| | || || | || Sbjct 421 AGATCAACAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACGTTGTCTGA 362 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||| |||||||||||||| ||||||||| ||||| | || | | |||||| Sbjct 361 TTACAACATTCAAAAGGAATCCACTCTTCACCTGGTGCTGCGTCTTAGGGGAGGG 307 >seq99092 Length=231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || ||||||||||| | || ||| ||||||||| | || ||||| Sbjct 59 AAGCAAAAA-TTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCA 117 Query 25173 GGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 || |||||||| |||||| | | | ||| | ||||| ||||||||||| ||||| | Sbjct 118 GGTAAACAATTAGAAGATGGACGTACATTAT--CTGATTATAATATTCAAAAAGAATCAA 175 Query 25231 CTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | | || | || ||||| ||| |||| || Sbjct 176 CATTGCATTTAGTATTACGTTTAAGAGGTGG 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409529993557592