Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq99092 223 5e-53 seq99093 199 6e-46 seq131321 187 4e-42 seq77635 185 1e-41 seq6934 123 4e-23 seq95674 116 6e-21 seq127998 105 1e-17 seq108713 104 4e-17 seq71855 96.9 5e-15 seq71856 87.8 3e-12 seq98341 84.2 3e-11 >seq99092 Length=231 Score = 223 bits (246), Expect = 5e-53 Identities = 173/206 (84%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 124561 TAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAAC 124620 ||||||| ||||| || || |||| |||||||||||||||||||| ||| ||||| Sbjct 2 TAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAAG 61 Query 124621 AGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAA 124680 |||||||||||||||||||| |||||||| || |||||||| | || |||||||| | Sbjct 62 CAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGTA 121 Query 124681 AACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGC 124740 |||||||||| ||| | || |||||| |||||||||||||||||||||||||| |||| Sbjct 122 AACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCAACATTGC 181 Query 124741 ATTTGGTTTTACGTTTACGAGGTGGT 124766 |||| || ||||||||| |||||||| Sbjct 182 ATTTAGTATTACGTTTAAGAGGTGGT 207 >seq99093 Length=221 Score = 199 bits (220), Expect = 6e-46 Identities = 167/205 (81%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124561 TAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAAC 124620 ||||||| ||||| || || |||| |||||||||||||||||||| ||| ||||| Sbjct 2 TAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAAG 61 Query 124621 AGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAA 124680 |||||||||||||||||||| |||||||| || |||||||| | || |||||||| | Sbjct 62 CAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGTA 121 Query 124681 AACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGC 124740 |||||||||| ||| | || |||||| ||||||||||||||||||||||| ||| | | Sbjct 122 AACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCGACTCTTC 181 Query 124741 ATTTGGTTTTACGTTTACGAGGTGG 124765 | ||||| ||| | | |||||||| Sbjct 182 ACTTGGTATTAAGGCTTCGAGGTGG 206 >seq131321 Length=300 Score = 187 bits (206), Expect = 4e-42 Identities = 154/188 (82%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||||||||||| | || ||| |||| || ||||| || || |||| ||||||||| Sbjct 188 CAATGCAAATATTTGTTAAAACATTAACTGGTAAAACAATTACATTAGATGTTGAAGCAA 129 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| ||||| ||||| |||||||||||||| |||||||| || | Sbjct 128 ATGATACAATACAAAATGTAAAAGCAAAAATACAAGATAAAGAAGGAATACCACCAGAAC 69 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | || |||||||| ||||||||||||||| || |||||||| ||||||| Sbjct 68 AACAAAGATTAATATTTGCAGGTAAACAATTAGAGGATGGTAGAACATTATCTGATTATA 9 Query 124717 ATATTCAA 124724 |||||||| Sbjct 8 ATATTCAA 1 Score = 105 bits (116), Expect = 1e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | ||||| || |||||||||||||| ||| | || || || |||||| Sbjct 300 CAACAAAGATTGATTTTCGCTGGAAAACAATTAGAAGATGGACGTACTTTGAGTGATTAT 241 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||||||||| || ||||| || ||| | ||| |||||||| Sbjct 240 AATATTCAAAAAGAATCAACATTACATTTAGTATTAAGATTAAGAGGTGGT 190 >seq77635 Length=207 Score = 185 bits (204), Expect = 1e-41 Identities = 165/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600 |||||||||| | || ||| |||| || ||||| || ||| |||| ||||| ||||||| Sbjct 207 GCAAATATTTGTTAAAACATTAACGGGAAAAACAATCACTTTAGACGTTGAACCAAATGA 148 Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660 ||| || ||| ||||| ||||||||||||||||||||||| || || || ||||| Sbjct 147 TACCATACAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAGCAACA 88 Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720 | | | ||||||||||||||||||||||| ||| |||| |||||| ||||| || || Sbjct 87 ACGATTGATTTTTGCAGGAAAACAATTAGAAGATGGTCGTACATTATCTGATTACAACAT 28 Query 124721 TCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||||| || || ||||| || Sbjct 27 CCAAAAAGAATCCACATTACATTTAGT 1 >seq6934 Length=470 Score = 123 bits (136), Expect = 4e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 205651 TCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTA 205710 ||||| |||||||| || || | || | | || ||| || || | ||||||| | Sbjct 11 TCAGGATTATTTTTAATCTTGTCAATCACAGATGCTAACTGGTCCACTCCTTGACCGTCA 70 Query 205711 TAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACT 205770 || ||||| | ||| |||| ||||||||| |||||||||||||| ||||| ||||||||| Sbjct 71 TAGTTTGTGTGCATGTCAACATATTTAGCTCCAAAATGACGCCACTGAAATCCATAAACT 130 Query 205771 GGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGAT 205830 || || | ||| || || | ||| | || ||||| | || || | | | | | ||| Sbjct 131 GGGCCAAGATCTCCCTCCTCTCTGTGATGCAAACCTTGCTTGTTAAGAAAATCTCGTGAA 190 Query 205831 CCATTTTCATCCCAAATATGGATTCCTTTAT 205861 ||||| ||||||| | ||| ||||| |||| Sbjct 191 CCATTAGCATCCCAGAAATGAATTCCCTTAT 221 >seq95674 Length=384 Score = 116 bits (128), Expect = 6e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||||||||| || || || || || ||| | ||| |||| || Sbjct 53 ATGCAGATCTTTGTAAAGACACTCACGGGGAAGACAATCACTTTGGAGGTTGAGCCATCA 112 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| ||| || ||||| || || || || ||||| |||||| Sbjct 113 GACACCATTGAAAATGTAAAGGCGAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAA 172 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||||||||| || || | || ||| | || || || ||||| || Sbjct 173 CAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACGTTGTCTGATTACAAC 232 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||| | || |||| Sbjct 233 ATTCAAAAGGAATCCACTCTTCACCTGGT 261 >seq127998 Length=685 Score = 105 bits (116), Expect = 1e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | || || || ||||| |||||||| || | ||| | ||| || Sbjct 663 ACCATGCAGATCTTTGTGAAAACCCTGACAGGGAAAACTATCACCCTTGAGGTGGAACCA 604 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| | || ||| | ||| || ||||| ||||| |||||||| || |||||| Sbjct 603 TCGGATTCCATCGAAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGAT 544 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||| | || ||||||||||| || ||| | || ||| | ||||| | ||||| Sbjct 543 CAACAGCGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTAC 484 Query 124716 AATATTCAAAAAGAATCAACT 124736 || || || |||||||| ||| Sbjct 483 AACATACAGAAAGAATCCACT 463 >seq108713 Length=694 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || ||||| || || | ||| |||| || | | Sbjct 650 ATGCAGATCTTTGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAGGTTGAGGCCAGT 591 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||||||||| ||||||||||| || || |||||| Sbjct 590 GATACTATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCTCCCGATCAA 531 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || ||||| || || ||| | || || | || || || Sbjct 530 CAACGTCTGATTTTCGCTGGGAAACAGTTGGAAGATGGCCGCACTCTCTCCGACTACAAC 471 Query 124719 ATTCAAAAAGAATCAAC 124735 || || ||||| || || Sbjct 470 ATCCAGAAAGAGTCCAC 454 >seq71855 Length=408 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || ||||| || || || | || |||| |||| | Sbjct 245 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTCGACGTTGAGGCAAGT 186 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || || ||||| || || || ||||||||||| Sbjct 185 GACACCATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCTGATCAG 126 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || || |||||| | || || | ||| || || Sbjct 125 CAGCGCCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCAGACTACAAC 66 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || || || || ||||| ||||| || ||| | || |||||| Sbjct 65 ATTCAGAAGGAGTCCACGTTGCACTTGGTGTTGCGTCTTCGCGGTGGT 18 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || |||||||| || ||||| |||||| | || || ||||| || || Sbjct 389 AAGATACAGGACAAGGAAGGTATCCCCCCTGACCAACAACGTCTCATCTTTGCTGGTAAG 330 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| |||||||| | | || | ||||||||||| || || || || || ||||| Sbjct 329 CAACTAGAGGATGGAAGGACCCTGTCTGATTATAATATACAGAAGGAGTCGACGCTGCAT 270 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || | ||| |||| ||||| Sbjct 269 TTGGTATTGAGATTAAGAGGAGGTAT 244 >seq71856 Length=271 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || |||||||| || ||||| |||||| | || || ||||| || || Sbjct 252 AAGATACAGGACAAGGAAGGTATCCCCCCTGACCAACAACGTCTCATCTTTGCTGGTAAG 193 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| |||||||| | | || | ||||||||||| || || || || || ||||| Sbjct 192 CAACTAGAGGATGGAAGGACCCTGTCTGATTATAATATACAGAAGGAGTCGACGCTGCAT 133 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || | ||| |||| ||||| Sbjct 132 TTGGTATTGAGATTAAGAGGAGGTAT 107 >seq98341 Length=429 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| ||||| |||||||| || ||||||||||| | || ||||||||||| || Sbjct 32 AAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAGCGACTCATTTTTGCAGGCAAG 91 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 ||| | || ||| | ||||| | ||||| || || || |||||||| ||| Sbjct 92 CAACTGGAAGATGGCAGAACACTTTCTGATTACAACATACAGAAAGAATCCACT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753066605990400