Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq99093 127 3e-24 seq99092 113 7e-20 seq77635 111 2e-19 seq131321 109 8e-19 seq149518 89.7 8e-13 seq149517 89.7 8e-13 seq149514 89.7 8e-13 seq72878 89.7 8e-13 >seq99093 Length=221 Score = 127 bits (140), Expect = 3e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||||| ||| ||||||||||| || | ||| |||||||| ||||||||||| Sbjct 209 GTTCCACCTCGAAGCCTTAATACCAAGTGAAGAGTCGATTCTTTTTGAATATTATAATCA 150 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | || | | ||| ||||||||||| || ||||| || |||||||| || || || Sbjct 149 GATAATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGT 90 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||||||||| Sbjct 89 GGTATTCCTTCTTTATCTTG 70 >seq99092 Length=231 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | |||||| ||||| || || |||||||| ||||||||||| || Sbjct 206 CCACCTCTTAAACGTAATACTAAATGCAATGTTGATTCTTTTTGAATATTATAATCAGAT 147 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| || ||||| || |||||||| || || || || Sbjct 146 AATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTGGT 87 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 86 ATTCCTTCTTTATCTTG 70 >seq77635 Length=207 Score = 111 bits (122), Expect = 2e-19 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || |||||||| || |||||||| || || ||||| || | || | | ||| ||| Sbjct 1 ACTAAATGTAATGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTACGACCATCTTCT 60 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 ||||||||||| ||||||||||||| ||| || || |||||||| |||||||||||||| Sbjct 61 AATTGTTTTCCTGCAAAAATCAATCGTTGTTGCTCTGGAGGAATACCTTCTTTATCTTGA 120 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||| ||| || |||| ||||||||||| Sbjct 121 ATTTTTGCTTTTACATTTTGTATGGTATCATTTGGTTCAACGTCTAAAGTGATTGTTTTT 180 Query 146249 CCTGTTAATGTTTTAATGAATATTTGC 146275 || ||||||||||||| ||||||||| Sbjct 181 CCCGTTAATGTTTTAACAAATATTTGC 207 >seq131321 Length=300 Score = 109 bits (120), Expect = 8e-19 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| || | ||||| | ||| ||||||||||| || ||||| || |||||| Sbjct 5 ATATTATAATCAGATAATGTTCTACCATCCTCTAATTGTTTACCTGCAAATATTAATCTT 64 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || || || || || ||||||||||||||||| ||| Sbjct 65 TGTTGTTCTGGTGGTATTCCTTCTTTATCTTGTATTTTTGCTTTTACATTTTGTATTGTA 124 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||| || |||| ||| ||||||||||| ||||||||||||| ||||||||| Sbjct 125 TCATTTGCTTCAACATCTAATGTAATTGTTTTACCAGTTAATGTTTTAACAAATATTTGC 184 Query 146276 ATT 146278 ||| Sbjct 185 ATT 187 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| |||||||| || |||||||| ||||||||||| Sbjct 191 CCACCTCTTAATCTTAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCACTC 250 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTG 146160 | ||| | | ||| ||||||||||||||||| |||||||||||||| || Sbjct 251 AAAGTACGTCCATCTTCTAATTGTTTTCCAGCGAAAATCAATCTTTGTTG 300 >seq149518 Length=270 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| |||||||| | ||| || | ||||| |||||||||||||||||| Sbjct 234 ATGTTATAATCACTAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTT 175 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||||||||| || ||||| Sbjct 174 TGCTGGTCAGGTGGAATTCCTTCCTTGTCTTG 143 >seq149517 Length=289 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| |||||||| | ||| || | ||||| |||||||||||||||||| Sbjct 234 ATGTTATAATCACTAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTT 175 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||||||||| || ||||| Sbjct 174 TGCTGGTCAGGTGGAATTCCTTCCTTGTCTTG 143 >seq149514 Length=710 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| |||||||| | ||| || | ||||| |||||||||||||||||| Sbjct 234 ATGTTATAATCACTAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTT 175 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||||||||| || ||||| Sbjct 174 TGCTGGTCAGGTGGAATTCCTTCCTTGTCTTG 143 >seq72878 Length=280 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| |||||||| | ||| || | ||||| |||||||||||||||||| Sbjct 50 ATGTTATAATCACTAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTT 109 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||||||||| || ||||| Sbjct 110 TGCTGGTCAGGTGGAATTCCTTCCTTGTCTTG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741174737525760