Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq142104 324 1e-83 seq139941 320 2e-82 seq47423 127 2e-24 seq55664 84.2 2e-11 >seq142104 Length=1514 Score = 324 bits (358), Expect = 1e-83 Identities = 584/851 (69%), Gaps = 2/851 (0%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || ||||| | ||||||||| ||||| || ||||| || || || || ||||| || Sbjct 364 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 423 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| || ||||| || ||||| | | || || ||| | | | || Sbjct 424 TCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAACCAGA 483 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 | ||| || || |||||||| || ||||||||||| ||| |||||| || || | Sbjct 484 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGC 543 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||||| || | |||||||| | || | || ||| || ||| || || |||||| Sbjct 544 TTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATC 603 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAA 16243 | ||| || | | | | || ||| | |||| | ||||| ||||| ||||| Sbjct 604 GATTTTATGACTTTTTCTGATGGTTTGTTGACCAAGTATGAGAACATCATACAGGCAAAG 663 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 |||||||| | || ||||| | ||| || | ||| ||||| || || ||||||||||| Sbjct 664 TCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCATC 723 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 || | ||||| | ||| || || || ||||| |||||||| ||||| || ||||| Sbjct 724 TTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTCC 783 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT-CTAtttttactttctatccattt 16422 || || ||||| ||||| | | |||||| || | | || ||| | || ||||| || Sbjct 784 ACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTG-ATCCAATT 842 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 ||||| | |||||| | | ||||| ||| |||| || ||||| || | | Sbjct 843 CAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTTG 902 Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542 | |||||| || ||| ||||| || || | | ||| |||||||| || || Sbjct 903 CTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAGAGTG 962 Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||| |||||||| || || ||||| || ||||| || || | | ||| ||||| Sbjct 963 GATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGACTTC 1022 Query 16603 AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | ||| | || | ||||| || || || || ||||||||||| || || || || Sbjct 1023 CTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGAAAGC 1082 Query 16663 AAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATC 16722 ||| | ||| || || |||| |||| | ||| |||||||| ||||||| ||| Sbjct 1083 AAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCTTTATC 1142 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTT 16782 ||| || | |||||| || || | ||||| || || || |||||||||| ||||||| Sbjct 1143 TTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACATTTG 1202 Query 16783 CCATATGTCTT 16793 ||| || |||| Sbjct 1203 CCAAATATCTT 1213 >seq139941 Length=1515 Score = 320 bits (354), Expect = 2e-82 Identities = 583/851 (69%), Gaps = 2/851 (0%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || ||||| | ||||||||| ||||| || ||||| || || || || ||||| || Sbjct 1151 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 1092 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| || ||||| || ||||| | | || || ||| | | | || Sbjct 1091 TCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAACCAGA 1032 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 | ||| || || |||||||| || ||||||||||| ||| |||||| || || | Sbjct 1031 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGC 972 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||||| || | |||||||| | || | || ||| || ||| || || |||||| Sbjct 971 TTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATC 912 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAA 16243 | ||| || | | | | || ||| | |||| ||||| ||||| ||||| Sbjct 911 GATTTTATGACTTTTTCTGATGGTTTGTTGACCAAGTACGAGAACATCATACAGGCAAAG 852 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 |||||||| | || ||||| | ||| || | ||| ||||| || || ||||||||||| Sbjct 851 TCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCATC 792 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 || | ||||| | ||| || || || ||||| |||||||| ||||| || ||||| Sbjct 791 TTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTCC 732 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT-CTAtttttactttctatccattt 16422 || || ||||| ||||| | | |||||| || | | || ||| | || ||||| || Sbjct 731 ACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTG-ATCCAATT 673 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 ||||| | |||||| | | ||||| ||| |||| || ||||| || | | Sbjct 672 CAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTTG 613 Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542 | |||||| || ||| ||||| || || | | ||| |||||||| || || Sbjct 612 CTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAGAGTG 553 Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||| |||||||| || || ||||| || ||||| || || | | ||| ||||| Sbjct 552 GATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGACTTC 493 Query 16603 AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | ||| | || | ||||| || || || || ||||||||||| || || || || Sbjct 492 CTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGAAAGC 433 Query 16663 AAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATC 16722 ||| | ||| || || |||| |||| | ||| |||||||| ||||||| ||| Sbjct 432 AAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCTTTATC 373 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTT 16782 ||| || | |||||| || || | ||||| || || || |||||||||| ||||||| Sbjct 372 TTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACATTTG 313 Query 16783 CCATATGTCTT 16793 ||| || |||| Sbjct 312 CCAAATATCTT 302 >seq47423 Length=281 Score = 127 bits (140), Expect = 2e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | |||||||| ||||| || | || |||||||| || || ||||| || || | Sbjct 48 ACATGAGGCAAGCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGA 107 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | || || |||||||| || |||| ||| || | ||| || |||| ||||||||||| | Sbjct 108 AGGTGAGCCCTGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCG 167 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAA 16379 ||||||| || || |||||||||||||| |||| Sbjct 168 AAAAGAAGATGCCCTCAACTGCGGCAAAGGCAA 200 >seq55664 Length=318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 58111 TAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACGTATGGCAA 58170 ||||||| || ||||| || |||||||||||| | || || |||| ||| ||||| | Sbjct 22 TAGGAATTGATGAAGGCCAGTTTTTTCCAGATGTGGTGGAGTTTTCAGAAGAAATGGCTA 81 Query 58171 ACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTT 58214 |||||||| ||||||| ||||||| ||||| || |||||| Sbjct 82 GTCTTGGAAAAACTGTAATAATTGCTGCATTAGATGGAACATTT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461049143920800