Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq96271 120 2e-22 seq96269 120 2e-22 seq6934 100 2e-16 seq96270 87.8 1e-12 >seq96271 Length=453 Score = 120 bits (132), Expect = 2e-22 Identities = 234/346 (68%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 |||||||||||| ||| || | || ||||| | |||||| |||||| || || Sbjct 1 CCAATTTTACGTCAACAATGGAGAGCTCTCTTGTCAGCTCTATCAAAGATCCGGGGACAT 60 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| |||||||| || || || ||||| |||||| | || || || | |||| ||||| Sbjct 61 GGGCCTGGGTGTACCCTTTAACATTGCCAGTTATTCCCTTCTGACATTCCTGATAGCACA 120 Query 20550 TGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCT 20609 ||| | ||||| | |||||||| ||||| || | ||||| || ||| |||| | Sbjct 121 TGTCTGTGGGTTAAAGCCTGGTGACTTTGTCCATACACTGGGAGATGCACATGTTTATTT 180 Query 20610 TAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCT 20669 ||||| || ||| |||| ||| | ||| | | || | ||| || ||||||||| || Sbjct 181 AAATCACATTGAAGCTTTGAAACTCCAGCTTCAAAGAGAGCCATTACCATTCCCAACCCT 240 Query 20670 TCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGA 20729 || | || |||| ||||||| | || || ||| || |||| | | Sbjct 241 GAAGATAAAGCGTGTTGTTCCAGATATTGATAGCTTCAAGTTTGAGGACTTTGAGATCAT 300 Query 20730 AGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTAA 20775 || || || | ||| | ||||| |||| ||||| |||| ||| Sbjct 301 CGGATACAAGCACCACCCTACAATTAAAATGAAAATGGCTGTCTAA 346 >seq96269 Length=446 Score = 120 bits (132), Expect = 2e-22 Identities = 234/346 (68%), Gaps = 0/346 (0%) Strand=Plus/Minus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 |||||||||||| ||| || | || ||||| | |||||| |||||| || || Sbjct 446 CCAATTTTACGTCAACAATGGAGAGCTCTCTTGTCAGCTCTATCAAAGATCCGGGGACAT 387 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| |||||||| || || || ||||| |||||| | || || || | |||| ||||| Sbjct 386 GGGCCTGGGTGTACCCTTTAACATTGCCAGTTATTCCCTTCTGACATTCCTGATAGCACA 327 Query 20550 TGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCT 20609 ||| | ||||| | |||||||| ||||| || | ||||| || ||| |||| | Sbjct 326 TGTCTGTGGGTTAAAGCCTGGTGACTTTGTCCATACACTGGGAGATGCACATGTTTATTT 267 Query 20610 TAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCT 20669 ||||| || ||| |||| ||| | ||| | | || | ||| || ||||||||| || Sbjct 266 AAATCACATTGAAGCTTTGAAACTCCAGCTTCAAAGAGAGCCATTACCATTCCCAACCCT 207 Query 20670 TCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGA 20729 || | || |||| ||||||| | || || ||| || |||| | | Sbjct 206 GAAGATAAAGCGTGTTGTTCCAGATATTGATAGCTTCAAGTTTGAGGACTTTGAGATCAT 147 Query 20730 AGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTAA 20775 || || || | ||| | ||||| |||| ||||| |||| ||| Sbjct 146 CGGATACAAGCACCACCCTACAATTAAAATGAAAATGGCTGTCTAA 101 >seq6934 Length=470 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 ||||| ||| | || || || ||||||||||| ||| | |||||||||||| |||||||| Sbjct 147 GAGGGAGATCTTGGCCCAGTTTATGGATTTCAGTGGCGTCATTTTGGAGCTAAATATGTT 88 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 |||||| ||||||| ||| || |||||||| || || ||| | ||| ||| | Sbjct 87 GACATGCACACAAACTATGACGGTCAAGGAGTGGACCAGTTAGCATCTGTGATTGACAAG 28 Query 20335 ATTAAAACGAACCCAAACGACAG 20357 ||||||| || || | ||||| Sbjct 27 ATTAAAAATAATCCTGATGACAG 5 >seq96270 Length=204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20254 CATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAA 20313 |||||||||||| |||||||||||||| ||||||| ||| || |||||||| || || Sbjct 2 CATTTTGGAGCTAAATATGTTGACATGCACACAAACTATGACGGTCAAGGAGTGGACCAG 61 Query 20314 TTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGC 20373 ||| | ||| ||| | ||||||| || || | ||||| | || || | Sbjct 62 TTAGCATCTGTGATTGACAAGATTAAAAATAATCCTGATGACAGGCGGATCATCATGACA 121 Query 20374 GCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAA 20433 || |||||| || || |||||| |||||| | |||||||| || | | |||| Sbjct 122 GCTTGGAACCCTGTCGACTTGCCTTCCATGGCTCTTCCTCCATGCCACTCGTTTGTCCAA 181 Query 20434 TTTTACGT 20441 ||||| || Sbjct 182 TTTTATGT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397953004863460