Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq142104 232 6e-56 seq139941 226 3e-54 seq47423 107 2e-18 >seq142104 Length=1514 Score = 232 bits (256), Expect = 6e-56 Identities = 434/628 (69%), Gaps = 10/628 (2%) Strand=Plus/Plus Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || || | ||| ||||| ||||||||||| ||||| || | ||| || || || ||||| Sbjct 646 AACATCATACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAG 705 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 || |||| ||||||||| || | ||||||| ||| || || ||||| || || || Sbjct 706 AAGGTTAGACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCA 765 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 || ||||| ||||| || || |||||||| || | || | || ||| | |||||| || Sbjct 766 GAGAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTT 825 Query 14375 TTGTTCGAT-ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 | | | | ||||| || ||||| | || |||| | | | || |||||| || Sbjct 826 TC-TGGGTTGATCCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTC 884 Query 14434 AATAGCATTAAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGT 14491 ||| ||||| || | || | || || ||| || |||||| || ||||| | Sbjct 885 AATGGCATTGAAAAGTTGCTGTTTTTCAGCCGAGTCCTC--AATGTAAGTTTCAATCAAC 942 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | || |||||||||||||| || || || || ||||| || || ||||| |||||||| Sbjct 943 AGACTGTACATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTC 1002 Query 14552 GCTTCTGACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14610 || |||| ||| || | ||| ||||| | || |||| || ||||| || || || Sbjct 1003 GCCTCTGGAACTTGGACTTCCTGGCTAAAA-CACTCAACCAAGTTCTCATTCACAATGCC 1061 Query 14611 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAG 14670 ||| ||||| || || || || | | || || || || || || |||| || Sbjct 1062 ATCGCTAGCAGCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAG 1121 Query 14671 TTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730 ||| ||| || || ||| || |||||||| ||||| || ||||||| || || Sbjct 1122 TTTAGCCCAGTCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGC 1181 Query 14731 AACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC- 14789 |||| ||||| |||||| ||| || ||||||||| || |||| || ||||||| Sbjct 1182 TTCAGCCTTTTTGTACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATCG 1241 Query 14790 TTGAAGATGTTTCTTTAAGAATTGGTTC 14817 || ||| ||||| |||| |||||| Sbjct 1242 GTGTGGAT-TTTCTCGGAGAAGTGGTTC 1268 >seq139941 Length=1515 Score = 226 bits (250), Expect = 3e-54 Identities = 433/628 (69%), Gaps = 10/628 (2%) Strand=Plus/Minus Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || || | ||| ||||| ||||||||||| ||||| || | ||| || || || ||||| Sbjct 869 AACATCATACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAG 810 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 || |||| ||||||||| || | ||||||| ||| || || ||||| || || || Sbjct 809 AAGGTTAGACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCA 750 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 || ||||| ||||| || || |||||||| || | || | || ||| | |||||| || Sbjct 749 GAGAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTT 690 Query 14375 TTGTTCGAT-ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 | | | | ||||| || ||||| | | |||| | | | || |||||| || Sbjct 689 TC-TGGGTTGATCCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTC 631 Query 14434 AATAGCATTAAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGT 14491 ||| ||||| || | || | || || ||| || |||||| || ||||| | Sbjct 630 AATGGCATTGAAAAGTTGCTGTTTTTCAGCCGAGTCCTC--AATGTAAGTTTCAATCAAC 573 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | || |||||||||||||| || || || || ||||| || || ||||| |||||||| Sbjct 572 AGACTGTACATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTC 513 Query 14552 GCTTCTGACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14610 || |||| ||| || | ||| ||||| | || |||| || ||||| || || || Sbjct 512 GCCTCTGGAACTTGGACTTCCTGGCTAAAA-CACTCAACCAAGTTCTCATTCACAATGCC 454 Query 14611 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAG 14670 ||| ||||| || || || || | | || || || || || || |||| || Sbjct 453 ATCGCTAGCAGCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAG 394 Query 14671 TTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730 ||| ||| || || ||| || |||||||| ||||| || ||||||| || || Sbjct 393 TTTAGCCCAGTCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGC 334 Query 14731 AACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC- 14789 |||| ||||| |||||| ||| || ||||||||| || |||| || ||||||| Sbjct 333 TTCAGCCTTTTTGTACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATCG 274 Query 14790 TTGAAGATGTTTCTTTAAGAATTGGTTC 14817 || ||| ||||| |||| |||||| Sbjct 273 GTGTGGAT-TTTCTCGGAGAAGTGGTTC 247 >seq47423 Length=281 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||| ||||| ||||| || || || || | || || || || || | Sbjct 56 CAAGCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGAAGGTGAGC 115 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 |||||||| | |||| ||| || | ||| || || | || ||||| || |||||||| Sbjct 116 CCTGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCGAAAAGAAG 175 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370 || ||||||||||| ||||| || || | || ||||||||| || || Sbjct 176 ATGCCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCCAAAGGAGGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480820013219040