Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq108713 93.3 3e-14 seq127998 87.8 1e-12 seq98341 84.2 2e-11 seq130988 82.4 6e-11 seq99093 82.4 6e-11 >seq108713 Length=694 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || | ||| || | ||| || || || ||||| || ||||||||||||| Sbjct 423 TCCGCCCCTAAGACGAAGCACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 482 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||| ||||| || || | || || | ||||||||| || Sbjct 483 GAGAGTGCGGCCATCTTCCAACTGTTTCCCAGCGAAAATCAGACGTTGTTGATCGGGAGG 542 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| ||| || | | ||| ||| |||| || ||| Sbjct 543 GATACCTTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATAGTATCACTGGCCTCAAC 602 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| ||||||| |||| || || | || || ||||| || ||||| || Sbjct 603 CTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACAAAGATCTGCATCTT 653 >seq127998 Length=685 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| || | || | |||||| || |||||||| || |||||||| || | Sbjct 434 CCGCCACGTAGCCTCAACACAAGGTGAAGAGTGGATTCTTTCTGTATGTTGTAATCAGAA 493 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||||| ||| ||||| ||| | || |||| |||||||| || Sbjct 494 AGTGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAAATGAGTCGCTGTTGATCAGGAGGA 553 Query 18219 ACGCCTTCCTTATCGGCAA--TTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||||| || || ||| || || | | | | | || || || Sbjct 554 ATACCTTCCTTATCCTGAATCTTAGTT--TTCACATTTTCGATGGAATCCGATGGTTCCA 611 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| |||| || |||| ||||| ||||| || ||||| Sbjct 612 CCTCAAGGGTGATAGTTTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 660 >seq98341 Length=429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| || | || | |||||| || |||||||| || |||||||| || | Sbjct 174 CCGCCACGTAGCCTCAACACAAGGTGAAGAGTGGATTCTTTCTGTATGTTGTAATCAGAA 115 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||||| ||| ||||| ||| | || |||| |||||||| || Sbjct 114 AGTGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAAATGAGTCGCTGTTGATCAGGAGGA 55 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 54 ATACCTTCCTTATC 41 >seq130988 Length=550 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 || || || || || | ||| |||| || || ||||| || || ||||||||||||||| Sbjct 329 TAACCACCACGAAGGCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCG 270 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 || ||| | |||||||| || ||||| ||| |||| || | || || || Sbjct 269 CTCAGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGA 210 Query 18216 GGCACGCCTTCCTTAT-CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||||| || | | | | ||| | ||| || | | | |||||| | || || Sbjct 209 GGGATACCTTCTTTGTCCTGGATCTTGGT-CTTCACGTTGTCGATAGTGTCGCTTGGTTC 151 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| |||| ||||||| || || || |||||||||||| Sbjct 150 CACCTCAAGAGTGATGGTTTTTCCGGTCAGAGTCTTCACGAAAATTTGCATT 99 >seq99093 Length=221 Score = 82.4 bits (90), Expect = 6e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || || | ||||| |||||| || |||||||||||||| || || || | Sbjct 207 TCCACCTCGAAGCCTTAATACCAAGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGA 148 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||| |||||||| || ||| | || | ||||||||| || || Sbjct 147 TAATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTGG 88 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTT 18247 | ||||| ||||| ||||| |||||| Sbjct 87 TATTCCTTCTTTATCTTGAATTT-TTGCTT 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378174187033860