Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq142104 199 8e-46 seq139941 194 3e-44 seq47423 134 3e-26 seq43932 105 1e-17 seq6934 102 2e-16 seq44199 98.7 2e-15 >seq142104 Length=1514 Score = 199 bits (220), Expect = 8e-46 Identities = 309/437 (71%), Gaps = 21/437 (5%) Strand=Plus/Minus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 || |||||||||||||| || |||||||||||||| |||| | || || |||||||| Sbjct 803 ATAGTTGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTC 744 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| | || || ||||| | |||| ||||| |||| ||| |||||| |||| | | Sbjct 743 TGGCTAAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGT 684 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 ||||| ||||||||| | |||||||| || ||| |||| | | || || | | Sbjct 683 GACGAGGGTCTTCATTGTGACTTTGCCTGTATGATGTTCTCATA---CTTGGTCAACAAA 627 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTG----TCACTGAAGCCGTCCGAATTGAACAAGA 102150 ||||| ||| |||| || | |||| | || || || || ||||||||||| Sbjct 626 CCATC-AGAAAAAG---TCATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGA 571 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210 ||| || |||| |||| || ||||| | | || |||||| || ||||||| || Sbjct 570 ATTCCTTACAGAAGCCCTTCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAACA 511 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTG-----AAATGGGACTAGAAAAGCAC 102265 ||||||||||||||| || || | ||| |||||| || || || |||| Sbjct 510 GTACATTGAATTTGTTGCTGACAGACTTCTGGTTGCTCTCAACTG---CT--CAAAGGTT 456 Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325 || |||| || ||||| || |||||||| || |||||| | ||| ||||| ||| Sbjct 455 TACAATGCTAAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAAC 396 Query 102326 TTTTTTGAAAAGAGAGT 102342 |||||||| |||||||| Sbjct 395 TTTTTTGAGAAGAGAGT 379 >seq139941 Length=1515 Score = 194 bits (214), Expect = 3e-44 Identities = 308/437 (70%), Gaps = 21/437 (5%) Strand=Plus/Plus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 || |||||||||||||| || |||||||||||||| |||| | || || |||||||| Sbjct 712 ATAGTTGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTC 771 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| | || || ||||| | |||| ||||| |||| ||| |||||| |||| | | Sbjct 772 TGGCTAAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGT 831 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 ||||| ||||||||| | |||||||| || ||| |||| | || || | | Sbjct 832 GACGAGGGTCTTCATTGTGACTTTGCCTGTATGATGTT---CTCGTACTTGGTCAACAAA 888 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTG----TCACTGAAGCCGTCCGAATTGAACAAGA 102150 ||||| ||| |||| || | |||| | || || || || ||||||||||| Sbjct 889 CCATC-AGAAAAAG---TCATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGA 944 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210 ||| || |||| |||| || ||||| | | || |||||| || ||||||| || Sbjct 945 ATTCCTTACAGAAGCCCTTCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAACA 1004 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTG-----AAATGGGACTAGAAAAGCAC 102265 ||||||||||||||| || || | ||| |||||| || || || |||| Sbjct 1005 GTACATTGAATTTGTTGCTGACAGACTTCTGGTTGCTCTCAACTG---CT--CAAAGGTT 1059 Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325 || |||| || ||||| || |||||||| || |||||| | ||| ||||| ||| Sbjct 1060 TACAATGCTAAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAAC 1119 Query 102326 TTTTTTGAAAAGAGAGT 102342 |||||||| |||||||| Sbjct 1120 TTTTTTGAGAAGAGAGT 1136 >seq47423 Length=281 Score = 134 bits (148), Expect = 3e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 || |||||||||| |||||||| || ||||||||| ||| |||| ||||| ||||||| Sbjct 203 TTATTGCCTTTGCCGCAGTTGAGGGCATCTTCTTTTCGGGTTCATTTGCATCTATTTTCT 144 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| || ||| | |||| || ||||||| |||||||||||| || |||| Sbjct 143 GGCTCAAGAAAAGAGGTCTCATGCCAGGGCTCACCTTCTCCAATGAGTTGATCAGCAGGG 84 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGC 102064 |||| || ||||| | |||||||| ||| Sbjct 83 ACGAGGGGCTTCACTGTGACTTTGCTTGC 55 >seq43932 Length=221 Score = 105 bits (116), Expect = 1e-17 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 35544 TTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGA 35603 || || | || ||||||||| |||| | ||||| ||||| | || || || |||||| Sbjct 181 TTCTGTCAGCCTGGAATCCTGCGGATTTGCACCTCATGGCGTTGCCCCCGTGTCACATGT 122 Query 35604 -CTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGA 35662 |||| || || ||||| || || || ||| |||| |||| | |||| ||||| | Sbjct 121 TCTGC-CAGTTCTATGTTGCCAACGGTGAACTGTCCTGCCTGATGTACCAGCGCTCGTGT 63 Query 35663 GATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGAC 35712 ||| | || ||||||||||||||||| || ||||| || ||||| ||||| Sbjct 62 GATATGGGCTTGGGCGTGCCCTTCAACATCGCATCTTATTCTCTGCTGAC 13 >seq6934 Length=470 Score = 102 bits (112), Expect = 2e-16 Identities = 205/304 (67%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 35147 AAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCT 35206 || || ||||| || || |||||||| | |||||||| || | |||||||| || Sbjct 393 AAAGAAGATAGGACAGGTACAGGAACAATCTCCATTTTCGGTGCTCAAATGAGATTTAGC 334 Query 35207 CTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTG 35266 || ||| || ||| |||| | ||||| || ||| | || ||| | ||||| | Sbjct 333 CTGCGAAACAACAGCTTTCCTCTCCTCACAACAAAGCGTGTGTTTTGGCGCGGAGTGGCC 274 Query 35267 GAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAG 35326 || || || |||||| | || || ||| | || ||| | ||| | ||| Sbjct 273 GAGGAGCTGCTGTGGTTTGTGAGTGGTTGTACTAATGCAAAACAGTTGAGTGATAAGGGA 214 Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386 || || ||||| | |||||||| || || || ||| | ||| ||| || | | Sbjct 213 ATTCATTTCTGGGATGCTAATGGTTCACGAGATTTTCTTAACAAGCAAGGTTTGCATCAC 154 Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 |||| ||||||||| | || || || || ||||| || |||||||||||||| ||| || Sbjct 153 AGAGAGGAGGGAGATCTTGGCCCAGTTTATGGATTTCAGTGGCGTCATTTTGGAGCTAAA 94 Query 35447 TATG 35450 |||| Sbjct 93 TATG 90 >seq44199 Length=311 Score = 98.7 bits (108), Expect = 2e-15 Identities = 204/297 (69%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT-ACCTGTTCT 35461 |||| || || ||||| ||||| ||||| || ||||| || | || | || || | Sbjct 20 TGGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTTGGGGCGAAGTACCAGGACATGCACA 79 Query 35462 TCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAAT---ATACTAAAGACCCTGAGA 35518 | || || |||||| |||| | ||||| ||||| | || | |||| | | Sbjct 80 -CTGACTACACTGGACAGGGCGTGGATCAGCTGGCCGAGTGCATCCGGAAGATCAAG--- 135 Query 35519 GAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTT 35578 ||| |||| |||| | | || || || | || ||||||||| |||| | ||||| Sbjct 136 GAAGATCCCACTGATCGTCGTATCCTTCTGTCAGCCTGGAATCCTGCGGATTTGCACCTC 195 Query 35579 ATGGCTCTTCCTCCATGCCACATGA-CTGCTCAATTTTATGTGGCTAATGGAGAATTGTC 35637 ||||| | || || || |||||| |||| || || ||||| || || || ||| |||| Sbjct 196 ATGGCGTTGCCCCCGTGTCACATGTTCTGC-CAGTTCTATGTTGCCAACGGTGAACTGTC 254 Query 35638 GTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||| | |||| ||||| | ||| | || ||||||||||||||||| || || Sbjct 255 CTGCCTGATGTACCAGCGCTCGTGTGATATGGGCTTGGGCGTGCCCTTCAACATCGC 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 986375846601740