Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq96271 91.5 1e-13 seq96269 91.5 1e-13 seq43933 82.4 7e-11 >seq96271 Length=453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 ||||| || || || |||| || || |||||||| || || | | || ||| || Sbjct 177 TAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACATGT 118 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 || ||||| | ||||| |||| || ||||| |||||||| || || || ||||||||| Sbjct 117 GCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGCCCATG 58 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || |||| || || || ||||| || || ||||| || Sbjct 57 TCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCC 20 >seq96269 Length=446 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 ||||| || || || |||| || || |||||||| || || | | || ||| || Sbjct 270 TAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACATGT 329 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 || ||||| | ||||| |||| || ||||| |||||||| || || || ||||||||| Sbjct 330 GCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGCCCATG 389 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || |||| || || || ||||| || || ||||| || Sbjct 390 TCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCC 427 >seq43933 Length=829 Score = 82.4 bits (90), Expect = 7e-11 Identities = 177/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 21236 CAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAA 21295 |||||| ||||| ||||| || ||||| | || || ||||| ||||||||| Sbjct 29 CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAA 88 Query 21296 ATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCC 21355 || | ||||||||| ||||| || || ||||| ||||| || ||| | || ||||| Sbjct 89 GTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCC 148 Query 21356 CTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGA 21415 || ||| || |||| || |||| || |||||||| | || || | | || Sbjct 149 GCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACC-CTTCTCGG 207 Query 21416 -CAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCC 21474 || | | ||| || ||| || |||| ||||||||||| || |||| || || | Sbjct 208 TCAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCAC 267 Query 21475 TCCAAAACACCCTTTTGGTGGT 21496 ||| || || | ||||| || Sbjct 268 GCCAGAAGACGCGCTTGGTCGT 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426456833461440