Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq47423 123 2e-23 seq139941 120 2e-22 seq142104 114 9e-21 >seq47423 Length=281 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || ||||| ||| || | ||||| || |||||||| | || |||||||| Sbjct 198 GCCTTTGCCGCAGTTGAGGGCATCTTCTTTTCGGGTTCATTTGCATCTATTTTCTGGCTC 139 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||| | |||||||||||| | | || ||||| |||||||| ||| | ||||| Sbjct 138 AAGAAAAGAGGTCTCATGCCAGGGCTCACCTTCTCCAATGAGTTGATCAGCAGGGACGAG 79 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 || || ||||||||||||||||| Sbjct 78 GGGCTTCACTGTGACTTTGCTTG 56 >seq139941 Length=1515 Score = 120 bits (132), Expect = 2e-22 Identities = 283/418 (68%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| ||||| ||||| || | || ||||| || ||||| ||||| |||||||| Sbjct 718 GCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTCTGGCTA 777 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 || || | |||||||| | | || || || ||| | || || |||||||| Sbjct 778 AAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGTGACGAG 837 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 ||||| || ||||||||||| |||||| |||| | | ||| |||||||| |||| Sbjct 838 GGTCTTCATTGTGACTTTGCCTGTATGATGTTCTCGTACTTGGTCAACAAACC--ATCAG 895 Query 22930 GACGATGCACATCAAATC-AT-ATC--TGATGCCGTTGACATTG-AGACGGCTTTCTTCC 22984 | | ||| ||||| || ||| ||||| |||| ||||| | | | || ||| | Sbjct 896 AA--AAAGTCATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAATTCCTTAC 953 Query 22985 AAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGT---ATGAGACTGTACA 23041 | || | | || | | || | || ||||| ||| | |||| || ||||| Sbjct 954 AGAAGCCCTTCCAGTTAAGCTTA-TCGGCATGAA---CCACACTTTGATGAAACAGTACA 1009 Query 23042 TACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTG 23101 | | |||||||| || | || || | ||| || | ||||| | || || | | Sbjct 1010 TTGAATTTGTTGCTGACAGACTTCTGGTTGCTCTCAACTGCTCAAAGGTTTACAATGCTA 1069 Query 23102 CCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 || |||||||| |||||||| |||||| | | || || || |||||||| ||||| Sbjct 1070 AAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACTTTTTTGA 1127 >seq142104 Length=1514 Score = 114 bits (126), Expect = 9e-21 Identities = 282/418 (67%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| ||||| ||||| || | || ||||| || ||||| ||||| |||||||| Sbjct 797 GCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTCTGGCTA 738 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 || || | |||||||| | | || || || ||| | || || |||||||| Sbjct 737 AAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGTGACGAG 678 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 ||||| || ||||||||||| |||||| |||| | ||| |||||||| |||| Sbjct 677 GGTCTTCATTGTGACTTTGCCTGTATGATGTTCTCATACTTGGTCAACAAACC--ATCAG 620 Query 22930 GACGATGCACATCAAATC-AT-ATC--TGATGCCGTTGACATTG-AGACGGCTTTCTTCC 22984 | | ||| ||||| || ||| ||||| |||| ||||| | | | || ||| | Sbjct 619 AA--AAAGTCATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAATTCCTTAC 562 Query 22985 AAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGT---ATGAGACTGTACA 23041 | || | | || | | || | || ||||| ||| | |||| || ||||| Sbjct 561 AGAAGCCCTTCCAGTTAAGCTTA-TCGGCATGAA---CCACACTTTGATGAAACAGTACA 506 Query 23042 TACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTG 23101 | | |||||||| || | || || | ||| || | ||||| | || || | | Sbjct 505 TTGAATTTGTTGCTGACAGACTTCTGGTTGCTCTCAACTGCTCAAAGGTTTACAATGCTA 446 Query 23102 CCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 || |||||||| |||||||| |||||| | | || || || |||||||| ||||| Sbjct 445 AAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACTTTTTTGA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355135054394284