Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq142104 230 2e-55 seq139941 221 1e-52 seq47423 113 4e-20 >seq142104 Length=1514 Score = 230 bits (254), Expect = 2e-55 Identities = 590/886 (67%), Gaps = 18/886 (2%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || || ||||| | |||||| || ||||| ||||| || || || |||| || || || Sbjct 364 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 423 Query 13641 TCCATAAAATCAAATGGATTTATTGACAT---AAACACTTTATCACAACCTAGTTCTAAT 13697 ||||| || |||||||| ||| | | ||| |||| || | || || | | Sbjct 424 TCCATGAAGTCAAATGGGTTTTTAG-CATTGTAAACCTTTGAGCAGTTGAGAG--CAACC 480 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || | ||| ||||||| ||| ||||| || || ||| ||| ||||| || || Sbjct 481 AGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATA 540 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACA-CAGCCTCTTTTAT 13816 || || || |||| | || | ||||||| ||| || |||| |||| |||| || Sbjct 541 AGCTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAAT-GACAACAGCATCTTGGAT 599 Query 13817 AATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA--TTAAACAC 13874 || | | || | | | || || | || | || | | || | | ||| Sbjct 600 TATCGATTTTATGACTTTTTCTGATGGTT--TGTTGACCAAGTATGAGAACATCATACAG 657 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 ||||| ||||||||||| ||||| || | ||| || || || ||||| || |||| ||| Sbjct 658 GCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCT 717 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 |||||| || | ||||||| ||| || || |||||||| || || || ||||| ||| Sbjct 718 GGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATT 777 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-AT 14053 || || || |||||||| || | || | || ||| | ||||| | ||| | | | || Sbjct 778 CCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGC-TCTTTCTGGGTTGAT 836 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| || ||||| | || |||| | | | || |||||| ||||| ||||| || Sbjct 837 CCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAA 896 Query 14114 TAAATATTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | | || || ||| || |||||| || ||||| | | || |||||| Sbjct 897 AAGTTGCTGTTTTTCAGCCGAGTCCT--CAATGTAAGTTTCAATCAACAGACTGTACATT 954 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 |||||||| || || || || ||||| || || ||||| || ||||| || || | | Sbjct 955 TCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACT 1014 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || |||||| | ||| | || |||| || ||||| || || ||||| ||||| || Sbjct 1015 TGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCG 1074 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 || || || | | || || || || || || |||| ||||| ||| || Sbjct 1075 AAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCA 1134 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 | ||| || |||||||| ||||| || ||||||| || || |||| ||||| Sbjct 1135 TCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTG 1194 Query 14412 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 |||||| ||| || ||||||||| || |||| || ||||||| Sbjct 1195 TACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 1240 >seq139941 Length=1515 Score = 221 bits (244), Expect = 1e-52 Identities = 588/886 (66%), Gaps = 18/886 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || || ||||| | |||||| || ||||| ||||| || || || |||| || || || Sbjct 1151 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 1092 Query 13641 TCCATAAAATCAAATGGATTTATTGACAT---AAACACTTTATCACAACCTAGTTCTAAT 13697 ||||| || |||||||| ||| | | ||| |||| || | || || | | Sbjct 1091 TCCATGAAGTCAAATGGGTTTTTAG-CATTGTAAACCTTTGAGCAGTTGAGAG--CAACC 1035 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || | ||| ||||||| ||| ||||| || || ||| ||| ||||| || || Sbjct 1034 AGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATA 975 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACA-CAGCCTCTTTTAT 13816 || || || |||| | || | ||||||| ||| || |||| |||| |||| || Sbjct 974 AGCTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAAT-GACAACAGCATCTTGGAT 916 Query 13817 AATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA--TTAAACAC 13874 || | | || | | | || || | || | || | || | | ||| Sbjct 915 TATCGATTTTATGACTTTTTCTGATGGTT--TGTTGACCAAGTACGAGAACATCATACAG 858 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 ||||| ||||||||||| ||||| || | ||| || || || ||||| || |||| ||| Sbjct 857 GCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCT 798 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 |||||| || | ||||||| ||| || || |||||||| || || || ||||| ||| Sbjct 797 GGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATT 738 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-AT 14053 || || || |||||||| || | || | || ||| | |||||| ||| | | | || Sbjct 737 CCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTC-TGGGTTGAT 679 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| || ||||| | | |||| | | | || |||||| ||||| ||||| || Sbjct 678 CCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAA 619 Query 14114 TAAATATTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | | || || ||| || |||||| || ||||| | | || |||||| Sbjct 618 AAGTTGCTGTTTTTCAGCCGAGTCCTC--AATGTAAGTTTCAATCAACAGACTGTACATT 561 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 |||||||| || || || || ||||| || || ||||| || ||||| || || | | Sbjct 560 TCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACT 501 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || |||||| | ||| | || |||| || ||||| || || ||||| ||||| || Sbjct 500 TGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCG 441 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 || || || | | || || || || || || |||| ||||| ||| || Sbjct 440 AAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCA 381 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 | ||| || |||||||| ||||| || ||||||| || || |||| ||||| Sbjct 380 TCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTG 321 Query 14412 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 |||||| ||| || ||||||||| || |||| || ||||||| Sbjct 320 TACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 275 >seq47423 Length=281 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| ||||| ||||| || || || || | || || || || || | Sbjct 56 CAAGCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGAAGGTGAGC 115 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||| | |||| ||| || | ||| || || | |||||||| || |||||||| Sbjct 116 CCTGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCGAAAAGAAG 175 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14038 || ||||||||||| ||||| || || | || ||||||||| || || Sbjct 176 ATGCCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCCAAAGGAGGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478210692295200