Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq142104 250 2e-61 seq139941 241 1e-58 seq47423 107 2e-18 >seq142104 Length=1514 Score = 250 bits (276), Expect = 2e-61 Identities = 597/889 (67%), Gaps = 24/889 (3%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 || || ||||| | |||||| || ||||||||||| || || || |||| || || || Sbjct 364 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 423 Query 13429 TCCATAAAATCGAATGGATTTGTTGACAT---AAACACTTTATCACAACCTAGTTCTAAT 13485 ||||| || || ||||| ||| | | ||| |||| || | || || | | Sbjct 424 TCCATGAAGTCAAATGGGTTTTTAG-CATTGTAAACCTTTGAGCAGTTGAGAG--CAACC 480 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 | | ||| ||||||| ||| ||||| || || ||| ||| ||||| || || Sbjct 481 AGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATA 540 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACA-CAGCCTCGTTTAT 13604 || || || |||| | || | ||||||| ||| || |||| |||| || | || Sbjct 541 AGCTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAAT-GACAACAGCATCTTGGAT 599 Query 13605 AATA-ATCTTAATAATGTCATTAGAAGGAGGATATTTTAG-ATGTTTAAAAA--TTAAAC 13660 || || ||| || | || | || | || | | || | | || | | || Sbjct 600 TATCGATTTTA----TGACTTTTTCTGATGGTTTGTTGACCAAGTATGAGAACATCATAC 655 Query 13661 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13720 | ||||| ||||||||||| ||||| || | ||| || || || ||||| || |||| | Sbjct 656 AGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGAC 715 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 13780 |||||||| || | ||||||| ||| || || ||||| || || || || ||||| | Sbjct 716 CTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGA 775 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT--GTTTGA 13838 |||| || || |||||||| || | || | || ||| | |||||| ||| | |||| Sbjct 776 TTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTGA 835 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 | ||| || ||||| | || |||| | | | || |||||| || || ||||| Sbjct 836 T--CCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATT 893 Query 13899 GAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | || | || || ||| || |||||| || ||||| | | || ||| Sbjct 894 GAAAAGTTGCTGTTTTTCAGCCGAGTCCTC--AATGTAAGTTTCAATCAACAGACTGTAC 951 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||||||||| || || ||||| ||||| || || ||||| |||||||| || |||| Sbjct 952 ATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGA 1011 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||| || ||| | ||| | || ||||||| ||||| ||||| ||||| ||||| Sbjct 1012 ACTTGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCA 1071 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 || || || || | | || || || || || || |||| ||||| ||| Sbjct 1072 GCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAG 1131 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || || ||| || |||||||| ||||| || ||||||| || || |||| ||| Sbjct 1132 TCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTT 1191 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 || |||||| ||| || ||||||||| || |||| || ||||||| Sbjct 1192 TTGTACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 1240 >seq139941 Length=1515 Score = 241 bits (266), Expect = 1e-58 Identities = 595/889 (67%), Gaps = 24/889 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 || || ||||| | |||||| || ||||||||||| || || || |||| || || || Sbjct 1151 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 1092 Query 13429 TCCATAAAATCGAATGGATTTGTTGACAT---AAACACTTTATCACAACCTAGTTCTAAT 13485 ||||| || || ||||| ||| | | ||| |||| || | || || | | Sbjct 1091 TCCATGAAGTCAAATGGGTTTTTAG-CATTGTAAACCTTTGAGCAGTTGAGAG--CAACC 1035 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 | | ||| ||||||| ||| ||||| || || ||| ||| ||||| || || Sbjct 1034 AGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATA 975 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACA-CAGCCTCGTTTAT 13604 || || || |||| | || | ||||||| ||| || |||| |||| || | || Sbjct 974 AGCTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAAT-GACAACAGCATCTTGGAT 916 Query 13605 AATA-ATCTTAATAATGTCATTAGAAGGAGGATATTTTAG-ATGTTTAAAAA--TTAAAC 13660 || || ||| || | || | || | || | | || | || | | || Sbjct 915 TATCGATTTTA----TGACTTTTTCTGATGGTTTGTTGACCAAGTACGAGAACATCATAC 860 Query 13661 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13720 | ||||| ||||||||||| ||||| || | ||| || || || ||||| || |||| | Sbjct 859 AGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGAC 800 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 13780 |||||||| || | ||||||| ||| || || ||||| || || || || ||||| | Sbjct 799 CTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGA 740 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT--GTTTGA 13838 |||| || || |||||||| || | || | || ||| | |||||| ||| | |||| Sbjct 739 TTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTGA 680 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 | ||| || ||||| | | |||| | | | || |||||| || || ||||| Sbjct 679 T--CCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATT 622 Query 13899 GAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | || | || || ||| || |||||| || ||||| | | || ||| Sbjct 621 GAAAAGTTGCTGTTTTTCAGCCGAGTCCTC--AATGTAAGTTTCAATCAACAGACTGTAC 564 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||||||||| || || ||||| ||||| || || ||||| |||||||| || |||| Sbjct 563 ATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGA 504 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||| || ||| | ||| | || ||||||| ||||| ||||| ||||| ||||| Sbjct 503 ACTTGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCA 444 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 || || || || | | || || || || || || |||| ||||| ||| Sbjct 443 GCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAG 384 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || || ||| || |||||||| ||||| || ||||||| || || |||| ||| Sbjct 383 TCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTT 324 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 || |||||| ||| || ||||||||| || |||| || ||||||| Sbjct 323 TTGTACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 275 >seq47423 Length=281 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| ||||| ||||| || || || || | || || || || || | Sbjct 56 CAAGCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGAAGGTGAGC 115 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 |||||||| | |||| ||| || | ||| || || | || ||||| || |||||||| Sbjct 116 CCTGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCGAAAAGAAG 175 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 || ||||||||||| ||||| || || | || ||||||||| || || Sbjct 176 ATGCCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCCAAAGGAGGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477075095413920