Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq77635 89.7 4e-13 seq130988 87.8 1e-12 seq146721 82.4 6e-11 seq146718 82.4 6e-11 >seq77635 Length=207 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| || ||||| | |||||||| || |||||||| | || || Sbjct 1 ACTAAATGTAATGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTACGACCATCTTCT 60 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || |||||||||||||| ||||| || | || | ||||||||| || Sbjct 61 AATTGTTTTCCTGCAAAAATCAATCGTTGTTGCTCTGGAGGAATACCTTCTTTATCTTGA 120 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | | || || | || ||||||| || || |||||| Sbjct 121 ATTTTTGCTTTTACATTTTGTATGGTATCATTTGGTTCAACGTCTAAAGTGATTGTTTTT 180 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGC 43107 || |||| ||||| ||||| |||||| Sbjct 181 CCCGTTAATGTTTTAACAAATATTTGC 207 >seq130988 Length=550 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| ||||| || |||||| || | ||||| ||| | Sbjct 326 CCACCACGAAGGCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGCTC 267 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || ||||| ||||| || | ||||| || || | || Sbjct 266 AGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGG 207 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| || || || | | ||||||| | || || Sbjct 206 ATACCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATAGTGTCGCTTGGTTCCACC 147 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||||||||| ||||| ||||| |||||||||||| Sbjct 146 TCAAGAGTGATGGTTTTTCCGGTCAGAGTCTTCACGAAAATTTGCATT 99 >seq146721 Length=214 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | ||||| || || | |||||| |||| || | ||||| || || ||||| Sbjct 213 TTTTGGATGTTGTAGTCAGAAAGGGTACGTCCGTCTTCGAGCTGTTTCCCAGCGAAAATG 154 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 | |||||||||||||| || | ||| || || || |||| | || || | | Sbjct 153 AGTCGCTGTTGATCGGGAGGGATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCG 94 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | ||||||| ||| || || || | || || || ||||| || || || |||||||| Sbjct 93 ATGGTGTCGCTAGCTTCAACTTCAAGGGTGATGGTCTTTCCAGTCAGCGTCTTCACAAAG 34 Query 43102 ATTTGCAT 43109 || ||||| Sbjct 33 ATCTGCAT 26 >seq146718 Length=320 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| | || | |||| || ||||||||| | ||||| || || Sbjct 253 GCCACCACGGAGTCGGAGGACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 194 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || || | |||||| || || ||||| | |||||||||||||| || Sbjct 193 AAGCGTGCGACCATCTTCGAGTTGTTTCCCAGCGAAAATGAGTCGCTGTTGATCGGGAGG 134 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || |||| | || || | | | ||||||| ||| || || Sbjct 133 GATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATGGTGTCGCTAGCTTCAAC 74 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || |||||||| || ||||| Sbjct 73 TTCAAGGGTGATGGTCTTTCCAGTCAGCGTCTTCACAAAGATCTGCAT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380193540531624