Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq142104 152 8e-32 seq139941 147 3e-30 seq45252 104 3e-17 seq47423 95.1 2e-14 >seq142104 Length=1514 Score = 152 bits (168), Expect = 8e-32 Identities = 569/872 (65%), Gaps = 40/872 (5%) Strand=Plus/Minus Query 124999 TTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGA 125058 |||||||| ||| | || |||||| ||||||||||||||||| | |||||||| |||| Sbjct 1228 TTCCCATCCAATATAAAGATATTTGGCAAATGTACAAAAAGGCTGAAGCCTCCTTCTGGA 1169 Query 125059 CGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAA 125118 | | ||| || |||||||| ||||| || | || |||| | | || | ||| Sbjct 1168 CAGCCGAGGAAGTCGATCTTTCCAAAGATAAAGATGACTGGGCTAAACTTTCGGATGA-- 1111 Query 125119 CTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCA 125178 ||| | | || || |||| || | || ||||| || | |||||| || || | Sbjct 1110 -TGAAAGGTATTTCATCAAGCACGTTCTTGCTTTCTTCGCTGCTAGCGATGGCATTGTGA 1052 Query 125179 ACGACAA-TCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCT 125235 | || || | |||| | || | | || | | ||| ||||||||| | || | Sbjct 1051 ATGAGAACTTGGTTG--AGTGTTTTAGCCAG-GAAGTCCAAGTTCCAGAGGCGAGATGTT 995 Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 | || || |||||||| || ||||| | ||||| ||||||||| | |||||| Sbjct 994 TCTATGGCTTCCAAATAGCAATAGAGAATATCCACTCTGAAATGTACAGTCTGTTGATTG 935 Query 125296 ACATGTACATTCGCGA-TCCGC--AACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | | |||||| || || || || ||||| || || || || || || || Sbjct 934 AAACTTACATTGAGGACTCGGCTGAA---AAACAGCAACTTTTCAATGCCATTGAGACAA 878 Query 125353 TGCCGTCTAT-ACGTAAAAAGGCTCAATGGG---TGATTCGGTGGATCGATGACGACAAG 125408 |||| | | | | | |||| ||||| |||| ||| | |||||| | || | Sbjct 877 TGCCTTGTGTCATGCGAAAA-GCTCAGTGGGCCCTGAAT---TGGATCAACCCAGAAAGA 822 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | || || | || || | || || || || || || || || |||||||| || ||| Sbjct 821 GCATCTTATGGTGAGAGGATAGTTGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGT 762 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||||| ||||| || ||||| || ||| | || ||||| || || || | Sbjct 761 TCTTTTGCTGCCATTTTCTGGCTAAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCA 702 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || ||| | || ||| |||||||| || || |||||||||||| | | || ||| | Sbjct 701 AATGAGCTCATCAGTCGTGACGAGGGTCTTCATTGTGACTTTGCCTGTATGATG-TTCTC 643 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTG-TAACC-- 125645 | || || ||| | | ||| | ||||| ||||| || || | ||| | Sbjct 642 A--TA-CTTGGTCAACA------AACCATC--AGAAAAAGTCAT-AAAATCGATAATCCA 595 Query 125646 -GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||||| || || |||||||| || || || ||| |||| || || | | || || Sbjct 594 AGATGCTGTTGTCATTGAACAAGAATTCCTTACAGAAGCCCTTCCAGTTAAGCTTATCGG 535 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 ||||||| || | ||| ||||||| || ||||| || || | || ||| | Sbjct 534 CATGAACCACACTTTGATGAAACAGTACATTGAATTTGTTGCTGACAGACTTCTGGTTGC 475 Query 125765 GTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATC 125824 | | || ||| ||||||| || || || || ||||| |||||| | ||| || Sbjct 474 TCTCAACTGCTCAAAGGTTTACAATGCTAAAAACCCATTTGACTTCATGGAGAACATTTC 415 Query 125825 ACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 | ||||| ||||| |||||||| ||||||| Sbjct 414 CTTGGAGGGCAAGACAAACTTTTTTGAGAAGA 383 >seq139941 Length=1515 Score = 147 bits (162), Expect = 3e-30 Identities = 567/873 (65%), Gaps = 42/873 (5%) Strand=Plus/Plus Query 124999 TTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGA 125058 |||||||| ||| | || |||||| ||||||||||||||||| | |||||||| |||| Sbjct 287 TTCCCATCCAATATAAAGATATTTGGCAAATGTACAAAAAGGCTGAAGCCTCCTTCTGGA 346 Query 125059 CGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAA 125118 | | ||| || |||||||| ||||| || | || |||| | | || | ||| Sbjct 347 CAGCCGAGGAAGTCGATCTTTCCAAAGATAAAGATGACTGGGCTAAACTTTCGGATGA-- 404 Query 125119 CTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCA 125178 ||| | | || || |||| || | || ||||| || | |||||| || || | Sbjct 405 -TGAAAGGTATTTCATCAAGCACGTTCTTGCTTTCTTCGCTGCTAGCGATGGCATTGTGA 463 Query 125179 ACGACAA-TCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCT 125235 | || || | |||| | || | | || | | ||| ||||||||| | || | Sbjct 464 ATGAGAACTTGGTTG--AGTGTTTTAGCCAG-GAAGTCCAAGTTCCAGAGGCGAGATGTT 520 Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 | || || |||||||| || ||||| | ||||| ||||||||| | |||||| Sbjct 521 TCTATGGCTTCCAAATAGCAATAGAGAATATCCACTCTGAAATGTACAGTCTGTTGATTG 580 Query 125296 ACATGTACATTCGCGA-TCCGC--AACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | | |||||| || || || || ||||| || || || || || || || Sbjct 581 AAACTTACATTGAGGACTCGGCTGAA---AAACAGCAACTTTTCAATGCCATTGAGACAA 637 Query 125353 TGCCGTCTAT-ACGTAAAAAGGCTCAATGGG---TGATTCGGTGGATCGATGACGACAAG 125408 |||| | | | | | |||| || || |||| ||| | |||||| | || | Sbjct 638 TGCCTTGTGTCATGCGAAAA-GCCCAGTGGGCCCTGAAT---TGGATCAACCCAGAAAGA 693 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | || || | || || | || || || || || || || || |||||||| || ||| Sbjct 694 GCATCTTATGGTGAGAGGATAGTTGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGT 753 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||||| ||||| || ||||| || ||| | || ||||| || || || | Sbjct 754 TCTTTTGCTGCCATTTTCTGGCTAAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCA 813 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCG 125587 || ||| | || ||| |||||||| || || |||||||||||| | | |||| ||| Sbjct 814 AATGAGCTCATCAGTCGTGACGAGGGTCTTCATTGTGACTTTGCCTGTATGATGTTCTCG 873 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTG-TAACC- 125645 | || ||| | | ||| | ||||| ||||| || || | ||| | Sbjct 874 TA-----CTTGGTCAACA------AACCATC--AGAAAAAGTCAT-AAAATCGATAATCC 919 Query 125646 --GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703 ||||| || || |||||||| || || || ||| |||| || || | | || | Sbjct 920 AAGATGCTGTTGTCATTGAACAAGAATTCCTTACAGAAGCCCTTCCAGTTAAGCTTATCG 979 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 |||||||| || | ||| ||||||| || ||||| || || | || ||| | Sbjct 980 GCATGAACCACACTTTGATGAAACAGTACATTGAATTTGTTGCTGACAGACTTCTGGTTG 1039 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | || ||| ||||||| || || || || ||||| |||||| | ||| | Sbjct 1040 CTCTCAACTGCTCAAAGGTTTACAATGCTAAAAACCCATTTGACTTCATGGAGAACATTT 1099 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 | | ||||| ||||| |||||||| ||||||| Sbjct 1100 CCTTGGAGGGCAAGACAAACTTTTTTGAGAAGA 1132 >seq45252 Length=640 Score = 104 bits (114), Expect = 3e-17 Identities = 318/481 (66%), Gaps = 22/481 (5%) Strand=Plus/Plus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || ||| | || |||||| ||||||| ||||| || || ||||| || || | ||| | Sbjct 43 GGAGCTTTGGCAGTCTACCTGGAACCATGGCATGCCGATGTTTTCGAGTTCTTGGAGCTT 102 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 || |||||| |||| || ||| || |||||||| | || |||| || |||||| Sbjct 103 CGTAAAAACCATGGCAAGGAGGAGCAGCGTGCCAGGGATCTCTTCTATGGCCTTTGGGTG 162 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCT-ACTGGAGCCTAATGTGCCCCGA 97075 || ||| | |||||| | || ||||| | ||| || |||||| ||| | |||||| | Sbjct 163 CCGGATCTCTTCATGGAACGTGTCAAGG-CGGACGCGGACTGGACCCTGTTTTGCCCCAA 221 Query 97076 CTCGTCACCCG--GTCT-GTCCG---ATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACA- 97128 | ||| || | | | ||| | ||| | || |||| | | | || Sbjct 222 CGAGTCCTACGACGACGAGACCGGGAAGGGCTTGATGGATCTCTTTGGCGAGGACTTCAA 281 Query 97129 -CGGC-CTAC--GAGC----AAG----AGGGCCGATACGTGAGACGAGTCGATGCACGAG 97176 |||| |||| |||| ||| |||| || ||||| || | || | Sbjct 282 TCGGCTCTACCTGAGCTTGGAAGCTGCAGGGAAAGGTCGGAAGACG-GTGAAGGCTCAGC 340 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 | ||||| | ||| ||| ||| ||| | ||||| || ||||| ||||| || |||| Sbjct 341 ATTTGTGGTCGCGCATTGTGGAGGCGCAGATGGAGACGGGCACTCCTTACATGCTGTACA 400 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 ||||| | |||||||| ||| || | |||||||||||||| | ||||||||| Sbjct 401 AGGATCATGCCAATCGCAAGTCCAATCAGCAGAACTTGGGCACCATCCACTGCTCCAATC 460 Query 97297 TGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCAT 97356 |||||||||| || | || ||| || | |||||| ||| || ||| | |||| | Sbjct 461 TGTGCACGGAGATCATCGAATACACCGCCGACGACGAGGTGGCGGTCTGCAATTTGGCTT 520 Query 97357 C 97357 | Sbjct 521 C 521 >seq47423 Length=281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || ||||| || ||||||||||||||||||||| ||||| | || || |||||| Sbjct 198 GCCTTTGCCGCAGTTGAGGGCATCTTCTTTTCGGGTTCATTTGCATCTATTTTCTGGCTC 139 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| | || |||||||| || || || | || ||||| || | |||||| Sbjct 138 AAGAAAAGAGGTCTCATGCCAGGGCTCACCTTCTCCAATGAGTTGATCAGCAGGGACGAG 79 Query 125553 GGCCTACACTGTGACTTTGC 125572 || || |||||||||||||| Sbjct 78 GGGCTTCACTGTGACTTTGC 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738715340909280