Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9941 98.7 8e-16 seq143705 86.0 5e-12 seq149515 82.4 6e-11 >seq9941 Length=214 Score = 98.7 bits (108), Expect = 8e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||| | |||||||| |||||||||||||| ||||| || | Sbjct 195 TTCCACCACGCAGTCGGAGCACGAGATGCAACGTCGACTCCTTTTGAATGTTGTAGTCAG 136 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || || ||||||||||||| || |||||| |||| || | |||||| || || Sbjct 135 ACAGAGTCCTGCCGTCCTCCAGCTGCTTTCCCGCAAAAATTAGACGCTGCTGGTCAGGGG 76 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTAC 18966 | | ||||||||||| ||| ||| ||||| Sbjct 75 GAATTCCCTCTTTGTCTTGAATCTTCGCCTTTAC 42 >seq143705 Length=477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || |||| | |||||| | ||| | ||||||||||| || ||||| || || Sbjct 210 TCCACCACGCAGACGTAACACTAAGTGAAGGGTAGACTCCTTCTGGATATTATAGTCGCT 269 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || || | ||||||| |||||| || || | || || ||||| || || ||| Sbjct 270 CAGAGTGCGACCATCCTCCAACTGTTTTCCAGCGAAGATCAGCCTCTGTTGGTCTGGGGG 329 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTT-ACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | ||| || ||||| || || ||| || || | ||| | ||||| ||| || Sbjct 330 GATGCCTTCCTTGTCTTGGATCTT-TGTCTTCACATTCTCGATGGAATCGCTAGGTTCTA 388 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||||||||| || || | |||||||| ||||| ||||| Sbjct 389 CTTCCAGGGTAATGGTTTTGCCAGTCAGGGTTTTGACGAAAATCTGCAT 437 >seq149515 Length=449 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || |||| | |||||| | ||| | ||||||||||| || ||||| || || Sbjct 244 TCCACCACGCAGACGTAACACTAAGTGAAGGGTAGACTCCTTCTGGATATTATAGTCGCT 185 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || || | ||||||| |||||| || || | || || ||||| || || ||| Sbjct 184 CAGAGTGCGACCATCCTCCAACTGTTTTCCAGCGAAGATCAGCCTCTGTTGGTCTGGGGG 125 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTT-ACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | ||| || ||||| || || ||| || || | ||| | ||||| ||| || Sbjct 124 GATGCCTTCCTTGTCTTGGATCTT-TGTCTTCACATTCTCGATGGAATCGCTAGGTTCTA 66 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||||||||| || || | |||||||| || || ||||| Sbjct 65 CTTCCAGGGTAATGGTTTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413294349209032