Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq99092 109 3e-19 seq77635 107 1e-18 >seq99092 Length=231 Score = 109 bits (120), Expect = 3e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| |||||||| || || || ||||||||||| || |||||||| ||||| ||||||| Sbjct 208 CACCACCTCTTAAACGTAATACTAAATGCAATGTTGATTCTTTTTGAATATTATAATCAG 149 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | || | || || || ||||| || || ||||||||| | ||| || || | | Sbjct 148 ATAATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTG 89 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 |||| |||||||| || ||| |||||| ||||||| || || || | || || Sbjct 88 GTATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTTTGAATTGTATCATTTGCTTCAA 29 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGT 33345 | || | || || ||||| || || Sbjct 28 CATCTAATGTAATTGTTTTACCTGT 4 >seq77635 Length=207 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| ||||| || |||||||| || ||||||||||| || | | || || Sbjct 1 ACTAAATGTAATGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTACGACCATCTTCT 60 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| ||||| ||| || || ||||| || || | || || |||||||| || | Sbjct 61 AATTGTTTTCCTGCAAAAATCAATCGTTGTTGCTCTGGAGGAATACCTTCTTTATCTTGA 120 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| |||| || || || || |||| |||||| | ||| || |||||| Sbjct 121 ATTTTTGCTTTTACATTTTGTATGGTATCATTTGGTTCAACGTCTAAAGTGATTGTTTTT 180 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGC 33367 ||||| | ||||| || || |||||| Sbjct 181 CCCGTTAATGTTTTAACAAATATTTGC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317794560411144