Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq77635 125 5e-24 seq99092 122 6e-23 seq99093 120 2e-22 seq131321 111 1e-19 seq108713 86.0 4e-12 >seq77635 Length=207 Score = 125 bits (138), Expect = 5e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||||| ||| |||||||| || || ||||| |||| ||| |||| || Sbjct 1 ACTAAATGTAATGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTACGACCATCTTCT 60 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||||||||| ||||| ||||| || || |||| | ||||||||||||| | Sbjct 61 AATTGTTTTCCTGCAAAAATCAATCGTTGTTGCTCTGGAGGAATACCTTCTTTATCTTGA 120 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| ||| || | | ||||| || || || || | || |||||||| Sbjct 121 ATTTTTGCTTTTACATTTTGTATGGTATCATTTGGTTCAACGTCTAAAGTGATTGTTTTT 180 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGC 44119 || ||||| || || |||||||||||| Sbjct 181 CCCGTTAATGTTTTAACAAATATTTGC 207 >seq99092 Length=231 Score = 122 bits (134), Expect = 6e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | ||| || ||||| | || |||||||||||||||||||| Sbjct 207 ACCACCTCTTAAACGTAATACTAAATGCAATGTTGATTCTTTTTGAATATTATAATCAGA 148 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| ||| |||| || |||||||| ||||||||||| || | ||| || || | || Sbjct 147 TAATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTGG 88 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || |||||||||||| ||||||| ||| || | || ||||| | || || Sbjct 87 TATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTTTGAATTGTATCATTTGCTTCAAC 28 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAA 44100 ||| | |||||||||||||| ||||| Sbjct 27 ATCTAATGTAATTGTTTTACCTGTTAA 1 >seq99093 Length=221 Score = 120 bits (132), Expect = 2e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 ||||| ||||| || || || |||||||||||||||||||| |||| ||| || Sbjct 194 CTTAATACCAAGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGATAATGTACGTCCA 135 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || |||||||| ||||||||||| || | ||| || || | |||| ||||||||| Sbjct 134 TCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTGGTATTCCTTCTTTA 75 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| ||||||| ||| || | || ||||| | || ||||| | |||||| Sbjct 74 TCTTGAATTTTTGCTTTTACATTTTGAATTGTATCATTTGCTTCAACATCTAATGTAATT 15 Query 44087 GTTTTACCGGTTAA 44100 |||||||| ||||| Sbjct 14 GTTTTACCTGTTAA 1 >seq131321 Length=300 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 43936 TTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAA 43995 ||||||||||||||| |||| | |||| || |||||||| ||||||||||| || Sbjct 1 TTGAATATTATAATCAGATAATGTTCTACCATCCTCTAATTGTTTACCTGCAAATATTAA 60 Query 43996 CCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAAC 44055 | ||| || || | |||| |||||||||||| |||||| ||| || | | Sbjct 61 TCTTTGTTGTTCTGGTGGTATTCCTTCTTTATCTTGTATTTTTGCTTTTACATTTTGTAT 120 Query 44056 AGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATAT 44115 ||||| | || ||||| | |||||||||||||| ||||| || || |||||||| Sbjct 121 TGTATCATTTGCTTCAACATCTAATGTAATTGTTTTACCAGTTAATGTTTTAACAAATAT 180 Query 44116 TTGCAT 44121 |||||| Sbjct 181 TTGCAT 186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| || ||||||| || |||||||||||||||||||| | Sbjct 190 ACCACCTCTTAATCTTAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCACT 249 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTG 44004 || ||| |||| || ||||||||||| || || ||||| | ||| || Sbjct 250 CAAAGTACGTCCATCTTCTAATTGTTTTCCAGCGAAAATCAATCTTTGTTG 300 >seq108713 Length=694 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTG 43977 || || ||| |||||| || || || || ||| | | || || |||| ||||| || Sbjct 448 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGC-CATCTTCCAACTG 506 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| || || || |||| ||||| || || |||| | ||||||||| ||| |||||| Sbjct 507 TTTCCCAGCGAAAATCAGACGTTGTTGATCGGGAGGGATACCTTCTTTGTCTTGAATTTT 566 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 || || | ||| |||||| | ||| || || | || || |||||||| || Sbjct 567 GGCCTTCACATTTTCAATAGTATCACTGGCCTCAACCTCAAGGGTGATGGTTTTACCCGT 626 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 | |||||||||||| || ||||| Sbjct 627 GAGAGTCTTCACAAAGATCTGCAT 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353683544376144