Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq143705 122 7e-23 seq149515 116 3e-21 seq127998 104 2e-17 seq130988 84.2 2e-11 seq98341 82.4 6e-11 >seq143705 Length=477 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 ||||| || || || ||||| || || || || || || |||| || ||| | ||| Sbjct 226 AACACTAAGTGAAGGGTAGACTCCTTCTGGATATTATAGTCGCTCAGAGTGCGACCATCC 285 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || || | || ||||||||||| || ||| | |||||| ||||| Sbjct 286 TCCAACTGTTTTCCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGGATGCCTTCCTTGTCT 345 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 || ||| ||||| | | | ||||||| |||||| ||||| |||||||||| Sbjct 346 TGGATCTTTGTCTTCACATTCTCGATGGAATCGCTAGGTTCTACTTCCAGGGTAATGGTT 405 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||| |||||||| ||||| ||||| Sbjct 406 TTGCCAGTCAGGGTTTTGACGAAAATCTGCAT 437 >seq149515 Length=449 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 ||||| || || || ||||| || || || || || || |||| || ||| | ||| Sbjct 228 AACACTAAGTGAAGGGTAGACTCCTTCTGGATATTATAGTCGCTCAGAGTGCGACCATCC 169 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || || | || ||||||||||| || ||| | |||||| ||||| Sbjct 168 TCCAACTGTTTTCCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGGATGCCTTCCTTGTCT 109 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 || ||| ||||| | | | ||||||| |||||| ||||| |||||||||| Sbjct 108 TGGATCTTTGTCTTCACATTCTCGATGGAATCGCTAGGTTCTACTTCCAGGGTAATGGTT 49 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||| |||||||| || || ||||| Sbjct 48 TTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 17 >seq127998 Length=685 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| ||||||||| | || || || |||||||| |||||||||||||| Sbjct 434 CCGCCACGTAGCCTCAACACAAGGTGAAGAGTGGATTCTTTCTGTATGTTGTAATCAGAA 493 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||| ||| ||||| ||| |||| || | ||||||||| || Sbjct 494 AGTGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAAATGAGTCGCTGTTGATCAGGAGGA 553 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||| || |||||| | | | ||||| |||||| Sbjct 554 ATACCTTCCTTATCCTGAATCTTAGTTTTCACATTTTCGATGGAATCCGATGGTTCCACC 613 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| || ||||| || |||| ||||| ||||| || ||||| Sbjct 614 TCAAGGGTGATAGTTTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 660 >seq130988 Length=550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || || || || || |||||||| |||| || ||| |||||| Sbjct 309 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 250 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || ||||| ||| | || || | ||| || || || | ||||||||||| Sbjct 249 CAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTG 190 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || || ||||| | | | | || |||| |||||| || | || |||||||| Sbjct 189 GATCTTGGTCTTCACGTTGTCGATAGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTTTT 130 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||| || || || |||||||||||| Sbjct 129 TCCGGTCAGAGTCTTCACGAAAATTTGCATT 99 >seq98341 Length=429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| ||||||||| | || || || |||||||| |||||||||||||| Sbjct 174 CCGCCACGTAGCCTCAACACAAGGTGAAGAGTGGATTCTTTCTGTATGTTGTAATCAGAA 115 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094 | ||| | |||||||| ||| ||||| ||| |||| || | ||||||||| Sbjct 114 AGTGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAAATGAGTCGCTGTTGATC 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418293285908868