Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq139941 306 3e-78 seq142104 304 1e-77 >seq139941 Length=1515 Score = 306 bits (338), Expect = 3e-78 Identities = 594/871 (68%), Gaps = 12/871 (1%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || ||||| | |||||| || |||||||||||||| || || || || ||||| || Sbjct 1151 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 1092 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || || || ||||| | | || ||| || | | | | Sbjct 1091 TCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAACCAGA 1032 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 | ||||||||||||||| || |||||||||||||| ||| |||||| || || | Sbjct 1031 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGC 972 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 || || || | |||||||| | || | || ||| || |||| || || | ||| Sbjct 971 TTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATC 912 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTTAAACATCATACATGC 13155 | |||| || || ||| |||| |||| | | | | ||||||||||| || Sbjct 911 GATTTTATGACTTTTTCTGATGG----TTTGTTGACCAAGTACGAGAACATCATACAGGC 856 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| ||||| || | || || || | ||| || ||||| ||||| || |||||||| || Sbjct 855 AAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGG 796 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| || | ||||| | ||| || || |||||||| ||||| || || || ||||| Sbjct 795 CATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCC 736 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTATTTTTACTCTCTATCC 13334 ||| || || ||||| || | | ||| |||||||| | | || ||| | | |||| Sbjct 735 TTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTG-ATCC 677 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 | || |||||| | |||||| | | || || ||| | || || || || || | Sbjct 676 AATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAA 617 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 | | |||||| ||| ||| ||||| || ||||| | || |||||||| | Sbjct 616 GTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAG 557 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | || ||||| || || ||||||||||| ||||| |||||||| ||||||| || || | Sbjct 556 AGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGA 497 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 |||| | ||| | || | ||||| || || || || || || |||||||| || | Sbjct 496 CTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGA 437 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTA-ACCAATCTGGA 13633 ||||||| | |||||| || || | |||| | || || || |||| ||| || Sbjct 436 AAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGA-AAGTTTAGCCCAGTCATCT 378 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATAC 13693 |||||| || | ||| || ||||| | ||||| || || || ||||||| || ||| Sbjct 377 TTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTAC 318 Query 13694 ATCATCCATATATCCTTATAAACAATGGGAA 13724 || ||| ||||| ||||| ||||||| Sbjct 317 ATTTGCCAAATATCTTTATATTGGATGGGAA 287 >seq142104 Length=1514 Score = 304 bits (336), Expect = 1e-77 Identities = 593/868 (68%), Gaps = 6/868 (1%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || ||||| | |||||| || |||||||||||||| || || || || ||||| || Sbjct 364 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 423 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || || || ||||| | | || ||| || | | | | Sbjct 424 TCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAACCAGA 483 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 | ||||||||||||||| || |||||||||||||| ||| |||||| || || | Sbjct 484 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGC 543 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 || || || | |||||||| | || | || ||| || |||| || || | ||| Sbjct 544 TTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATC 603 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA-AACATCATACATGCAAA 13158 | |||| || || ||| |||| || || | | | ||||||||||| ||||| Sbjct 604 GATTTTATGACTTTTTCTGATGGTTTGTT-GACCAAGTATGAGAACATCATACAGGCAAA 662 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||| || | || || || | ||| || ||||| ||||| || |||||||| ||||| Sbjct 663 GTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCAT 722 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || | ||||| | ||| || || |||||||| ||||| || || || |||||||| Sbjct 723 CTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTC 782 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTATTTTTACTCTCTATCCACT 13337 || || ||||| || | | ||| |||||||| | | || ||| | | ||||| | Sbjct 783 CACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTG-ATCCAAT 841 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 | |||||| | |||||| | | || || ||| | || || || || || | | Sbjct 842 TCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTT 901 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 | |||||| ||| ||| ||||| || ||||| | || |||||||| || | Sbjct 902 GCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAGAGT 961 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 | ||||| || || ||||||||||| ||||| |||||||| ||||||| || || |||| Sbjct 962 GGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGACTT 1021 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 | | ||| | || | ||||| || || || || || || |||||||| || |||| Sbjct 1022 CCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGAAAG 1081 Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTA-ACCAATCTGGAAAA 13636 |||| | |||||| || || | |||| | || || || |||| ||| || | Sbjct 1082 CAAGAACGTGCTTGATGAAATACCTTTCATCATCCGA-AAGTTTAGCCCAGTCATCTTTA 1140 Query 13637 TCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATC 13696 ||||| || | ||| || ||||| | ||||| || || || ||||||| || ||||| Sbjct 1141 TCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACATT 1200 Query 13697 ATCCATATATCCTTATAAACAATGGGAA 13724 ||| ||||| ||||| ||||||| Sbjct 1201 TGCCAAATATCTTTATATTGGATGGGAA 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429653345633256