Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq96271 129 4e-25 seq96269 129 4e-25 seq43933 105 5e-18 >seq96271 Length=453 Score = 129 bits (142), Expect = 4e-25 Identities = 181/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 25374 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 25432 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 249 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 191 Query 25433 TACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAG 25492 | ||||| | || || || || |||||||| || |||||||| || || || | || Sbjct 190 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 131 Query 25493 CCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTAC 25552 ||| || | || |||| | | || || || | || ||||| |||||||||||||| Sbjct 130 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 71 Query 25553 CCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCA 25612 || | ||||||| |||| || || || ||||||||||| ||||||||| | | | | | Sbjct 70 ACCCAGGCCCATGT-CCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGA 12 Query 25613 CGTAAAACTG 25622 ||||||| || Sbjct 11 CGTAAAATTG 2 >seq96269 Length=446 Score = 129 bits (142), Expect = 4e-25 Identities = 181/250 (72%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 25374 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 25432 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 198 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 256 Query 25433 TACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAG 25492 | ||||| | || || || || |||||||| || |||||||| || || || | || Sbjct 257 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 316 Query 25493 CCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTAC 25552 ||| || | || |||| | | || || || | || ||||| |||||||||||||| Sbjct 317 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 376 Query 25553 CCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCA 25612 || | ||||||| |||| || || || ||||||||||| ||||||||| | | | | | Sbjct 377 ACCCAGGCCCATGT-CCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGA 435 Query 25613 CGTAAAACTG 25622 ||||||| || Sbjct 436 CGTAAAATTG 445 >seq43933 Length=829 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 25796 |||||||||||| ||| || | |||||| | ||||||| ||||| || || || Sbjct 29 CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAA 88 Query 25797 ATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCC 25856 | | ||||||||| ||||| || || || ||||| || || || | || | ||||| Sbjct 89 GTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCC 148 Query 25857 CCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 25916 | ||| |||| || || | || || ||||| ||||| ||| | || |||||||||| Sbjct 149 GCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCCTTCTCGGT 208 Query 25917 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 25957 | | |||| ||| || ||| ||| ||||||||||| Sbjct 209 CAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339088690897044