Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq119668 95.1 1e-14 seq95675 89.7 4e-13 seq119666 87.8 2e-12 seq119664 87.8 2e-12 seq65045 87.8 2e-12 seq119672 82.4 6e-11 seq119665 82.4 6e-11 seq119663 82.4 6e-11 >seq119668 Length=339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | | ||| || ||||||||| ||||||||| |||||||| ||| Sbjct 315 ACCTCCTCGTAGACGGAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCACT 256 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || ||||||| |||||||| || || | || | ||||||||| || | Sbjct 255 CAGAGTG-CGTCCGTCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGG 197 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||| ||| || ||||| | || || |||| | ||| Sbjct 196 GGATGCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATAGTGTCGGAGGCCTCGA 137 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || |||||||| || || || ||||||||||| Sbjct 136 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 88 >seq95675 Length=322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||||| | | || || | ||||||||||| || || | Sbjct 316 CTCCTTCTGGATGTTGTAATCAGAGAGAGTG-CGACCATCCTCCAGCTGTTTTCCAGCAA 258 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||||||||||||||| || ||| | | ||||| ||| ||| || ||| | Sbjct 257 AAATTAAACGCTGCTGGTCAGGCGGAATGCCCTCCTTATCCTGAATCTTGGACTTTACGT 198 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | |||||||| | || ||| |||| || || || || || ||||| || |||| Sbjct 197 TCTCAATGGTATCCGAAGGCTCAACTTCGAGAGTGATCGTCTTGCCTGTGAGGGTCTTCA 138 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 137 CAAATATCTGCAT 125 >seq119666 Length=455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | | ||||| || || | ||| |||||| ||||||||||| |||| Sbjct 264 ACCACCGCGAAGACGCAACACCAAGTGCAACGTGGACTCCTTCTGAATGTTGTAGTCAGA 205 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | |||| ||||||| |||||||| || || |||| | ||||| || || || Sbjct 204 CAGTGTTCGCCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGGCGCTGTTGGTCAGGAGG 145 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||| || ||| | | ||||| || | || ||| Sbjct 144 GATACCCTCCTTGTCCTGAATCTTAGCCTTCACGTTTTCGATGGTGTCTGAAGCCTCAAC 85 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || || || || || || || || || ||||||||||| Sbjct 84 TTCCAGTGTGATCGTCTTGCCTGTCAGTGTCTTAACGAAAATCTGCAT 37 >seq119664 Length=481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | | ||||| || || | ||| |||||| ||||||||||| |||| Sbjct 290 ACCACCGCGAAGACGCAACACCAAGTGCAACGTGGACTCCTTCTGAATGTTGTAGTCAGA 231 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | |||| ||||||| |||||||| || || |||| | ||||| || || || Sbjct 230 CAGTGTTCGCCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGGCGCTGTTGGTCAGGAGG 171 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||| || ||| | | ||||| || | || ||| Sbjct 170 GATACCCTCCTTGTCCTGAATCTTAGCCTTCACGTTTTCGATGGTGTCTGAAGCCTCAAC 111 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || || || || || || || || || ||||||||||| Sbjct 110 TTCCAGTGTGATCGTCTTGCCTGTCAGTGTCTTAACGAAAATCTGCAT 63 >seq65045 Length=242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCT 48581 |||||| || ||||| ||||| ||||| || | | | || || | ||||| |||| Sbjct 219 ATGAAGAGTAGATTCCTTCTGAATATTGTAGTCCGATAGAGTG-CGACCATCCTCAAGCT 161 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||||||| || |||| | ||| || || ||| || | | |||||||||| ||||| Sbjct 160 GCTTACCGGCGAAAATGAGACGTTGTTGGTCCGGAGGGATTCCTTCCTTGTCCTGAATTT 101 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | | || ||||| | ||||| |||| || || || || |||| Sbjct 100 TAGACTTGACATTCTCAATAGTATCCGAGGACTCAACTTCGAGGGTGATAGTCTTTCCGG 41 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | ||| || || ||||||||||| Sbjct 40 TCAAAGTCTTTACGAAAATCTGCAT 16 >seq119672 Length=247 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | ||| |||||||| || ||||||||| ||||||||||| || Sbjct 223 ACCTCCACGGAGCCTAAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATC-GC 165 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || ||||||| || || || || | | || | |||||||| || | Sbjct 164 TGAGTGTGCGTCCGTCCTCTAGTTGTTTTCCTGCAAAGATAAGTCGCTGCTGGTCGGGGG 105 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || ||||||||| || || ||||| | || ||||| | || ||| Sbjct 104 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTATCTGAAGCTTCCA 45 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATC 48721 ||||| || ||||| || ||||| || || || || |||||| Sbjct 44 CCTCGAGAGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATC 1 >seq119665 Length=456 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | || || ||||| || || |||||| |||||||| || |||| Sbjct 264 ACCTCCACGAAGACGCAAGACCAAATGCAGCGTTGACTCCTTCTGAATGTTATAGTCAGA 205 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | |||| ||||||| |||||||| || || |||| | ||||| || || || Sbjct 204 CAGTGTTCGCCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGGCGCTGTTGGTCAGGAGG 145 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||| || ||| | | ||||| || | || ||| Sbjct 144 GATACCCTCCTTGTCCTGAATCTTAGCCTTCACGTTTTCGATGGTGTCTGAAGCCTCAAC 85 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || || || || || || || || || ||||||||||| Sbjct 84 TTCCAGTGTGATCGTCTTGCCTGTCAGTGTCTTAACGAAAATCTGCAT 37 >seq119663 Length=482 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | || || ||||| || || |||||| |||||||| || |||| Sbjct 290 ACCTCCACGAAGACGCAAGACCAAATGCAGCGTTGACTCCTTCTGAATGTTATAGTCAGA 231 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | |||| ||||||| |||||||| || || |||| | ||||| || || || Sbjct 230 CAGTGTTCGCCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGGCGCTGTTGGTCAGGAGG 171 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||| || ||| | | ||||| || | || ||| Sbjct 170 GATACCCTCCTTGTCCTGAATCTTAGCCTTCACGTTTTCGATGGTGTCTGAAGCCTCAAC 111 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || || || || || || || || || ||||||||||| Sbjct 110 TTCCAGTGTGATCGTCTTGCCTGTCAGTGTCTTAACGAAAATCTGCAT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419952154501028