Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq170347 210 3e-50 seq170346 210 3e-50 seq170345 210 3e-50 seq174588 203 5e-48 seq174522 203 5e-48 seq174521 203 5e-48 seq150554 188 1e-43 seq150552 188 1e-43 seq150548 188 1e-43 seq150557 132 8e-27 seq236786 127 3e-25 seq16183 127 3e-25 seq170344 87.8 3e-13 >seq170347 Length=2028 Score = 210 bits (232), Expect = 3e-50 Identities = 209/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | |||| ||||| |||||||||||||| |||||||| ||||| | Sbjct 89 CGCCAAGCGTCACCGAAAGATC-CTTCGTGATAACATCCAAGGCATCACCAAACCAGCCA 147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| ||||| || |||||||| ||||||| || |||| || |||| Sbjct 148 TCCGTCGTCTTGCTCGCCGTGGCGGTGTCAAGCGAATCTCTGGCCTGATCTACGAGGAGA 207 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| |||| | || | |||||| ||| ||| |||| ||||||| | || |||| Sbjct 208 CTCGTGGTGTTCTCAAAGTTTTCCTCGAGAACGTGATCCGTGATGCTGTGACATACACCG 267 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| | || || || ||||||| |||| Sbjct 268 AGCACGCCAAGAGAAAGACTGTGACAGCCATGGATGTGGTGTACGCTCTGAAACGACAAG 327 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || ||||| |||| Sbjct 328 GCCGTACTCTGTACGGATTTGGCGGTTA 355 >seq170346 Length=2062 Score = 210 bits (232), Expect = 3e-50 Identities = 209/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | |||| ||||| |||||||||||||| |||||||| ||||| | Sbjct 89 CGCCAAGCGTCACCGAAAGATC-CTTCGTGATAACATCCAAGGCATCACCAAACCAGCCA 147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| ||||| || |||||||| ||||||| || |||| || |||| Sbjct 148 TCCGTCGTCTTGCTCGCCGTGGCGGTGTCAAGCGAATCTCTGGCCTGATCTACGAGGAGA 207 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| |||| | || | |||||| ||| ||| |||| ||||||| | || |||| Sbjct 208 CTCGTGGTGTTCTCAAAGTTTTCCTCGAGAACGTGATCCGTGATGCTGTGACATACACCG 267 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| | || || || ||||||| |||| Sbjct 268 AGCACGCCAAGAGAAAGACTGTGACAGCCATGGATGTGGTGTACGCTCTGAAACGACAAG 327 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || ||||| |||| Sbjct 328 GCCGTACTCTGTACGGATTTGGCGGTTA 355 >seq170345 Length=2122 Score = 210 bits (232), Expect = 3e-50 Identities = 209/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | |||| ||||| |||||||||||||| |||||||| ||||| | Sbjct 89 CGCCAAGCGTCACCGAAAGATC-CTTCGTGATAACATCCAAGGCATCACCAAACCAGCCA 147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| ||||| || |||||||| ||||||| || |||| || |||| Sbjct 148 TCCGTCGTCTTGCTCGCCGTGGCGGTGTCAAGCGAATCTCTGGCCTGATCTACGAGGAGA 207 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| |||| | || | |||||| ||| ||| |||| ||||||| | || |||| Sbjct 208 CTCGTGGTGTTCTCAAAGTTTTCCTCGAGAACGTGATCCGTGATGCTGTGACATACACCG 267 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| | || || || ||||||| |||| Sbjct 268 AGCACGCCAAGAGAAAGACTGTGACAGCCATGGATGTGGTGTACGCTCTGAAACGACAAG 327 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || ||||| |||| Sbjct 328 GCCGTACTCTGTACGGATTTGGCGGTTA 355 >seq174588 Length=1418 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | | |||| |||||||| || || |||||||||||||| Sbjct 407 CGCTAAACGTCATCGTAAAATTTTAAGAGACAACATCCAGGGGATAACCAAGCCAGCTAT 348 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| || |||||| ||||||| || |||| || |||| Sbjct 347 CCGTCGTCTAGCTCGCCGTGGTGGTGTGAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 288 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| ||||||| ||| ||| || | ||||||| | ||| ||||| Sbjct 287 TCGTGGAGTCCTGAAAGTCTTCCTTGAGAACGTCATACGTGATGCTGTGACCTACACCGA 228 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || || ||||||| | ||||| || ||||||| ||||| Sbjct 227 GCACGCCAAACGAAAGACAGTGACAGCCATGGACGTGGTCTACGCTCTGAAACGCCAAGG 168 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || || ||||| |||| Sbjct 167 ACGTACTCTCTACGGATTTGGTGGTTA 141 >seq174522 Length=1979 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | | |||| |||||||| || || |||||||||||||| Sbjct 1013 CGCTAAACGTCATCGTAAAATTTTAAGAGACAACATCCAGGGGATAACCAAGCCAGCTAT 1072 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| || |||||| ||||||| || |||| || |||| Sbjct 1073 CCGTCGTCTAGCTCGCCGTGGTGGTGTGAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 1132 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| ||||||| ||| ||| || | ||||||| | ||| ||||| Sbjct 1133 TCGTGGAGTCCTGAAAGTCTTCCTTGAGAACGTCATACGTGATGCTGTGACCTACACCGA 1192 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || || ||||||| | ||||| || ||||||| ||||| Sbjct 1193 GCACGCCAAACGAAAGACAGTGACAGCCATGGACGTGGTCTACGCTCTGAAACGCCAAGG 1252 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || || ||||| |||| Sbjct 1253 ACGTACTCTCTACGGATTTGGTGGTTA 1279 >seq174521 Length=2478 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | | |||| |||||||| || || |||||||||||||| Sbjct 1013 CGCTAAACGTCATCGTAAAATTTTAAGAGACAACATCCAGGGGATAACCAAGCCAGCTAT 1072 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| || |||||| ||||||| || |||| || |||| Sbjct 1073 CCGTCGTCTAGCTCGCCGTGGTGGTGTGAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 1132 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| ||||||| ||| ||| || | ||||||| | ||| ||||| Sbjct 1133 TCGTGGAGTCCTGAAAGTCTTCCTTGAGAACGTCATACGTGATGCTGTGACCTACACCGA 1192 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || || ||||||| | ||||| || ||||||| ||||| Sbjct 1193 GCACGCCAAACGAAAGACAGTGACAGCCATGGACGTGGTCTACGCTCTGAAACGCCAAGG 1252 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || || ||||| |||| Sbjct 1253 ACGTACTCTCTACGGATTTGGTGGTTA 1279 >seq150554 Length=462 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||||| || || |||||||| |||||||||||||| || Sbjct 406 CGCCAAGCGTCACCGAAAAATCCTTCGGGACAATATCCAAGGCATCACCAAGCCAGCCAT 347 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| || ||| | ||||||| | |||| || |||| Sbjct 346 CCGTCGTCTTGCTCGCCGTGGTGGTGTTAAGAGAATCTCTGGCCTTATCTACGAGGAGAC 287 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| | || | |||||| ||| ||| |||| ||||||| | || ||||| Sbjct 286 TCGCGGTGTTCTCAAAGTTTTCCTCGAGAACGTGATCCGTGATGCTGTGACATACACCGA 227 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || |||||||| | || || || ||||||| ||||| Sbjct 226 GCACGCCAAGAGAAAGACTGTGACAGCCATGGATGTGGTGTACGCTCTGAAACGACAAGG 167 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | || || ||||| |||| Sbjct 166 CCGTACTCTGTACGGATTTGGCGGTTA 140 >seq150552 Length=619 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||||| || || |||||||| |||||||||||||| || Sbjct 563 CGCCAAGCGTCACCGAAAAATCCTTCGGGACAATATCCAAGGCATCACCAAGCCAGCCAT 504 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| || ||| | ||||||| | |||| || |||| Sbjct 503 CCGTCGTCTTGCTCGCCGTGGTGGTGTTAAGAGAATCTCTGGCCTTATCTACGAGGAGAC 444 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| | || | |||||| ||| ||| |||| ||||||| | || ||||| Sbjct 443 TCGCGGTGTTCTCAAAGTTTTCCTCGAGAACGTGATCCGTGATGCTGTGACATACACCGA 384 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || |||||||| | || || || ||||||| ||||| Sbjct 383 GCACGCCAAGAGAAAGACTGTGACAGCCATGGATGTGGTGTACGCTCTGAAACGACAAGG 324 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | || || ||||| |||| Sbjct 323 CCGTACTCTGTACGGATTTGGCGGTTA 297 >seq150548 Length=967 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||||| || || |||||||| |||||||||||||| || Sbjct 911 CGCCAAGCGTCACCGAAAAATCCTTCGGGACAATATCCAAGGCATCACCAAGCCAGCCAT 852 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| || ||| | ||||||| | |||| || |||| Sbjct 851 CCGTCGTCTTGCTCGCCGTGGTGGTGTTAAGAGAATCTCTGGCCTTATCTACGAGGAGAC 792 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| | || | |||||| ||| ||| |||| ||||||| | || ||||| Sbjct 791 TCGCGGTGTTCTCAAAGTTTTCCTCGAGAACGTGATCCGTGATGCTGTGACATACACCGA 732 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || |||||||| | || || || ||||||| ||||| Sbjct 731 GCACGCCAAGAGAAAGACTGTGACAGCCATGGATGTGGTGTACGCTCTGAAACGACAAGG 672 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | || || ||||| |||| Sbjct 671 CCGTACTCTGTACGGATTTGGCGGTTA 645 >seq150557 Length=243 Score = 132 bits (146), Expect = 8e-27 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | |||| ||||| |||||||||||||| |||||||| ||||| | Sbjct 150 CGCCAAGCGTCACCGAAAGATC-CTTCGTGATAACATCCAAGGCATCACCAAACCAGCCA 92 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| ||||| || |||||||| ||||||| || |||| || |||| Sbjct 91 TCCGTCGTCTTGCTCGCCGTGGCGGTGTCAAGCGAATCTCTGGCCTGATCTACGAGGAGA 32 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||||| |||| | || | ||||| Sbjct 31 CTCGTGGTGTTCTCAAAGTTTTCCT 7 >seq236786 Length=571 Score = 127 bits (140), Expect = 3e-25 Identities = 176/245 (72%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| || || || ||||| || || || || || ||||||||||| ||||| Sbjct 147 AGAT-TCTTCGTGACAATATTCAAGGCATTACAAAACCCGCCATCCGTCGTCTAGCTCGC 205 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 ||||| |||||||||||| | || | | || || |||| |||| || | ||| Sbjct 206 CGTGGCGGAGTCAAGCGTATAAGCGGTCTTATATACGAGGAGACCCGTGGAGTGCTCAAG 265 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 |||| || ||| |||||| | ||| ||| | || |||||||||||||| || ||| Sbjct 266 GTCTTTCTGGAGAACGTTATTCGTGACGCTGTTACGTACACCGAGCACGCTAAGCGAAAG 325 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || || || |||||||| | || || || | || || |||||||| | | || || Sbjct 326 ACCGTGACTGCCATGGATGTGGTATACGCCCTCAAGCGCCAAGGCCGCACCCTATACGGA 385 Query 16688 TTTGG 16692 ||||| Sbjct 386 TTTGG 390 >seq16183 Length=568 Score = 127 bits (140), Expect = 3e-25 Identities = 176/245 (72%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| || || || ||||| || || || || || ||||||||||| ||||| Sbjct 425 AGAT-TCTTCGTGACAATATTCAAGGCATTACAAAACCCGCCATCCGTCGTCTAGCTCGC 367 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 ||||| |||||||||||| | || | | || || |||| |||| || | ||| Sbjct 366 CGTGGCGGAGTCAAGCGTATAAGCGGTCTTATATACGAGGAGACCCGTGGAGTGCTCAAG 307 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 |||| || ||| |||||| | ||| ||| | || |||||||||||||| || ||| Sbjct 306 GTCTTTCTGGAGAACGTTATTCGTGACGCTGTTACGTACACCGAGCACGCTAAGCGAAAG 247 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || || || |||||||| | || || || | || || |||||||| | | || || Sbjct 246 ACCGTGACTGCCATGGATGTGGTATACGCCCTCAAGCGCCAAGGCCGCACCCTATACGGA 187 Query 16688 TTTGG 16692 ||||| Sbjct 186 TTTGG 182 >seq170344 Length=221 Score = 87.8 bits (96), Expect = 3e-13 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | |||| || |||| |||||||| || ||||| |||||||||| Sbjct 128 CGCCAAGCGTCACAGGAAGATC-CTGAGAGACAACATCCAGGGCATCACTAAGCCAGCTA 186 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 | |||||||| ||||| |||||||| || |||||| Sbjct 187 TTCGTCGTCTCGCTCGCCGTGGTGGTGTGAAGCGT 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78843854728404