Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq174639 300 5e-77 seq75038 280 4e-71 seq12672 262 1e-65 seq75039 190 6e-44 seq25321 187 7e-43 seq174641 179 1e-40 seq174640 127 6e-25 seq251946 109 2e-19 >seq174639 Length=919 Score = 300 bits (332), Expect = 5e-77 Identities = 486/693 (70%), Gaps = 6/693 (1%) Strand=Plus/Plus Query 19404 GCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGA 19463 ||||| | |||||||| ||||| ||| | || ||||| | ||||| | | || || Sbjct 192 GCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGC 251 Query 19464 AACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTAT 19523 || || ||||| | ||||| ||| | ||||| || ||||| || || | || || ||| Sbjct 252 AATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTAT 311 Query 19524 CCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTT 19583 || | ||||| | || |||||||| ||||| || || ||| |||||||| || Sbjct 312 CCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATTT 371 Query 19584 GTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCT 19643 || || | || || | | || || || | |||||| | |||||| | | Sbjct 372 GTAGTACTTCATTTTATGCTTGGTGTTGCTTGTTGGATGGGTAGAGAATGGGAATTCAGT 431 Query 19644 TACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCT 19703 | ||||||||| ||||||||||||||||| ||||| | ||||||| | ||||||| Sbjct 432 TTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCT 491 Query 19704 CTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTT 19763 |||| || ||| | ||||| ||| |||| |||| || ||| ||||| |||||| | Sbjct 492 TTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTA 551 Query 19764 GGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATG 19823 || || ||| |||||||| |||||| | || |||||||||||||| || || | ||| Sbjct 552 GGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATG 611 Query 19824 CATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATG 19883 ||||| ||||| || || || || ||||| ||||| || || || | || ||| ||| Sbjct 612 CATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATG 671 Query 19884 CACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTG-AGGATGTA-TCGCAGA 19941 || || || ||||| || || | || | | | ||||| |||| || | || | Sbjct 672 CATGGTTCATTAGTTACATCTTC--ACTTCTTGCAGA-AACTGCAGGAGATATTAGCCTA 728 Query 19942 ACT-ATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGG 20000 | | ||| |||||||| || ||||| || || || |||| || || || || || Sbjct 729 AATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGT 788 Query 20001 TACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTC 20060 || ||||| ||| | ||||||||||||||||| |||||||| |||||| | | || ||| Sbjct 789 TATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTC 848 Query 20061 TTTCTTGCTACTTTCCCCGTGGTTGGCATATGG 20093 || || || ||| || || |||| || ||| Sbjct 849 TTCCTAGCAGCTTGGCCAGTTATTGGGATTTGG 881 >seq75038 Length=481 Score = 280 bits (310), Expect = 4e-71 Identities = 349/478 (73%), Gaps = 0/478 (0%) Strand=Plus/Minus Query 19651 TAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTG 19710 |||||||| | || ||||| ||||| ||| ||| ||| | |||| || ||| | Sbjct 478 TAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCGG 419 Query 19711 TGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCT 19770 | ||| | |||||||| |||| ||||| ||| ||||| |||||| | || || | Sbjct 418 TATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTT 359 Query 19771 CTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGT 19830 | || ||||| || |||||| | || ||||||||||| || ||||| | |||||||| | Sbjct 358 CAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTT 299 Query 19831 TCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAA 19890 | || ||| | ||||| ||||| || || ||||| || | || ||||||||||| || Sbjct 298 TTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTT 239 Query 19891 GTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCT 19950 ||||||||||| || | || ||||||||||| ||| ||| || ||| | Sbjct 238 CATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTT 179 Query 19951 ATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 20010 ||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || ||||| Sbjct 178 ATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTC 119 Query 20011 GATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTA 20070 | || || || |||||||||||||||||||| || || |||||||||||||| | |||| Sbjct 118 GTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTA 59 Query 20071 CTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 || || || ||||| || ||| | || || | ||||| | || ||||| || || Sbjct 58 TTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 262 bits (290), Expect = 1e-65 Identities = 312/423 (74%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 19706 TGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGG 19765 ||| || ||| | |||||||| |||| ||||| ||| ||||| |||||| | || Sbjct 2 TGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGG 61 Query 19766 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCA 19825 || || || ||||| || |||||| | || ||||||||||| || ||||| | ||||| Sbjct 62 AATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCA 121 Query 19826 TCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 19885 ||| || || ||| | ||||| ||||| || || ||||| || | || ||||||||||| Sbjct 122 TCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCA 181 Query 19886 CGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTA 19945 || ||||||||||| || | || ||||||||||| ||| ||| || Sbjct 182 TGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGC 241 Query 19946 TGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 20005 ||| |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || Sbjct 242 TGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTT 301 Query 20006 TGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCT 20065 ||| | || || || |||||||||||||||||||| || || |||||||||||||| | Sbjct 302 TGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTT 361 Query 20066 TGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTT 20125 |||| || || || ||||| || ||| | || || | ||||| | || ||||| || Sbjct 362 AGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATT 421 Query 20126 CAA 20128 || Sbjct 422 TAA 424 >seq75039 Length=421 Score = 190 bits (210), Expect = 6e-44 Identities = 233/318 (73%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||||| ||| | || ||||| || ||||| | ||| | |||||||||||||| Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 |||||||| ||| || | ||||| || ||||| | || ||| | || ||||| Sbjct 321 ATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGTTGCTGCACCT 262 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || ||| | || ||||||||| Sbjct 261 CCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAAT 202 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||| | || || | |||| | || || ||||| || | || |||||||| || Sbjct 201 ATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATT 142 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | |||||||||| ||| |||| || || || || |||||| | |||| Sbjct 141 TGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGTT 82 Query 19590 TTCCACTTCTTAATAGGA 19607 | |||||| || ||||| Sbjct 81 TGCCACTTTTTCTTAGGA 64 >seq25321 Length=478 Score = 187 bits (206), Expect = 7e-43 Identities = 232/318 (73%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||||| ||| | || ||||| || ||||| | ||| | |||||||||||||| Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 |||||||| ||| || | ||||| || ||||| | || ||| | || ||||| Sbjct 189 ATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGTTGCTGCACCT 248 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || ||||| ||||| || ||||| || ||||| || || ||| | || ||||||||| Sbjct 249 CCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAAT 308 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||| | || || | |||| | || || ||||| || | || |||||||| || Sbjct 309 ATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATT 368 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | |||||||||| ||| |||| || || || || |||||| | |||| Sbjct 369 TGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGTT 428 Query 19590 TTCCACTTCTTAATAGGA 19607 | |||||| || ||||| Sbjct 429 TGCCACTTTTTCTTAGGA 446 >seq174641 Length=312 Score = 179 bits (198), Expect = 1e-40 Identities = 210/284 (74%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 |||||| | |||||| | || ||||||||| ||||||||||||||||| ||||| | Sbjct 310 GGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTC 251 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGT 19742 ||||||| | ||||||| |||| || ||| | ||||| ||| |||| |||| || Sbjct 250 TCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGC 191 Query 19743 TTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 19802 ||| ||||| |||||| | || || ||| |||||||| |||||| | || |||||| Sbjct 190 TTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAA 131 Query 19803 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGT 19862 |||||||| || || | |||||||| ||||| || || || || ||||| ||||| || Sbjct 130 GCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGA 71 Query 19863 GGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTC 19906 || || | || ||| ||||| || || ||||| || || Sbjct 70 GGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTC 27 >seq174640 Length=289 Score = 127 bits (140), Expect = 6e-25 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19946 TGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 20005 ||| |||||||| || ||||| || || || |||| || || || || || || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 20006 TGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCT 20065 ||| ||| | ||||||||||||||||| |||||||| |||||| | | || ||||| || Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 20066 TGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTT 20125 || ||| || || |||| || ||| | || | | ||| | | || |||||||| Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 20126 CAACCTTAATGGTTTTAACTTTAACCAGTC 20155 |||| | |||||||| ||||| ||||| || Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATC 47 >seq251946 Length=233 Score = 109 bits (120), Expect = 2e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19515 CACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCA 19574 ||||||||||| || |||||||| | |||||||||| |||||||| || || || || Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 19575 TATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGG 19634 ||| || | |||| | || || ||| |||| || || |||| | ||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 19635 GAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTA 19694 |||||| ||| | ||||| ||| | |||||||| | || || | || ||||| || Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 19695 TCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGT 19742 ||||||| || || ||||| || || ||| |||| ||||| ||| Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGGAAGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144007595241168