Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq142104 194 2e-44 seq139941 194 2e-44 seq55664 98.7 1e-15 seq47423 96.9 4e-15 >seq142104 Length=1514 Score = 194 bits (214), Expect = 2e-44 Identities = 389/577 (67%), Gaps = 8/577 (1%) Strand=Plus/Plus Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||||| ||| ||||| |||||||| | ||| || || | ||| || | ||||| || Sbjct 646 AACATCATACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAG 705 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || |||| ||| ||||| || |||||||||| ||| || || | ||||| | || Sbjct 706 AAGGTTAGACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCA 765 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT--T 21644 || ||||| || || || || |||||||| ||||||| | ||||| || |||| | Sbjct 766 GAGAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATA---AGATGCT 822 Query 21645 CTTTATCCAAT-ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 |||| | | ||||| || ||||| | || ||| | | |||| ||||| Sbjct 823 CTTTCTGGGTTGATCCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTC 882 Query 21704 TCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNN 21763 ||||| || || ||||| || | ||||||| | || ||| Sbjct 883 TCAATGGCATTGAAAAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAAC 942 Query 21764 NNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 ||| ||||||||||| || ||||| ||||| ||||| || || || || |||||||| Sbjct 943 AGACTGTACATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTC 1002 Query 21824 GCCTCTGAACATTGAACCT-CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 ||||||| | ||| || | | | ||||| | | | ||||||| ||||| || || || Sbjct 1003 GCCTCTGGAACTTGGACTTCCTGGCTAAAA-CACTCAACCAAGTTCTCATTCACAATGCC 1061 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 ||| || || || || || || | | | || || ||||| | ||| | ||| | | Sbjct 1062 ATCGCTAGCAGCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAG 1121 Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 ||| ||| || | |||||| || | ||| ||||| || | |||||| ||| || Sbjct 1122 TTTAGCCCAGTCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGC 1181 Query 22003 AATAGCCTTTTTATACATAATCCAGATATCATTATAT 22039 ||||||||| ||||| ||| ||||| |||||| Sbjct 1182 TTCAGCCTTTTTGTACATTTGCCAAATATCTTTATAT 1218 >seq139941 Length=1515 Score = 194 bits (214), Expect = 2e-44 Identities = 389/577 (67%), Gaps = 8/577 (1%) Strand=Plus/Minus Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||||| ||| ||||| |||||||| | ||| || || | ||| || | ||||| || Sbjct 869 AACATCATACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAG 810 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || |||| ||| ||||| || |||||||||| ||| || || | ||||| | || Sbjct 809 AAGGTTAGACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCA 750 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT--T 21644 || ||||| || || || || |||||||| ||||||| | ||||| || |||| | Sbjct 749 GAGAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATA---AGATGCT 693 Query 21645 CTTTATCCAAT-ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 |||| | | ||||| || ||||| | || ||| | | |||| ||||| Sbjct 692 CTTTCTGGGTTGATCCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTC 633 Query 21704 TCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNN 21763 ||||| || || ||||| || | ||||||| | || ||| Sbjct 632 TCAATGGCATTGAAAAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAAC 573 Query 21764 NNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 ||| ||||||||||| || ||||| ||||| ||||| || || || || |||||||| Sbjct 572 AGACTGTACATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTC 513 Query 21824 GCCTCTGAACATTGAACCT-CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 ||||||| | ||| || | | | ||||| | | | ||||||| ||||| || || || Sbjct 512 GCCTCTGGAACTTGGACTTCCTGGCTAAAA-CACTCAACCAAGTTCTCATTCACAATGCC 454 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 ||| || || || || || || | | | || || ||||| | ||| | ||| | | Sbjct 453 ATCGCTAGCAGCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAG 394 Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 ||| ||| || | |||||| || | ||| ||||| || | |||||| ||| || Sbjct 393 TTTAGCCCAGTCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGC 334 Query 22003 AATAGCCTTTTTATACATAATCCAGATATCATTATAT 22039 ||||||||| ||||| ||| ||||| |||||| Sbjct 333 TTCAGCCTTTTTGTACATTTGCCAAATATCTTTATAT 297 >seq55664 Length=318 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 65586 TGTTATTGGTATAGATGAGGGACAGTTTTTTCCAGATATTGTTAATTTTTCGGAATCTAT 65645 |||| | || || ||||| || ||||||||||||||| | || | ||||| ||| || Sbjct 17 TGTTTTAGGAATTGATGAAGGCCAGTTTTTTCCAGATGTGGTGGAGTTTTCAGAAGAAAT 76 Query 65646 GGCAAATATTGGTAAAATTGTTATTATCGCCGCCTTAGACGGTACTTATAAAAGAAGTCC 65705 ||| | | |||| |||| ||| || || || || ||||| || || | | || | || | Sbjct 77 GGCTAGTCTTGGAAAAACTGTAATAATTGCTGCATTAGATGGAACATTTCAACGGAGGGC 136 Query 65706 GTTTAATGATATTTTACAACTTATACCATTATCAGAGAAAGTTATAAAACTAAATGCGGT 65765 ||| || || | ||| | || ||| |||| | || | ||||| ||||| || Sbjct 137 TTTTGGCAGCATATTGGATCTTGTTCCTTTAGCAGAAAGCGTCGTCAAACTTAATGCAGT 196 Query 65766 ATGTATGAATTGTTATGGAGACGCATCTTTTTCAAAAAGAATTAGTGACGAAAAAGAAAT 65825 |||||| |||| | ||| || | ||| |||||||| | |||| || ||| | | Sbjct 197 TTGTATGCATTGCTTCAAAGATGCTGCATTTACAAAAAGATTGGGTGAGGAGAAAAAGGT 256 Query 65826 AGAGATTATAGGAGGAAGTGAAAAATA 65852 ||| | ||||| || ||| ||||| Sbjct 257 TGAGGTAATAGGGGGTGCTGATAAATA 283 >seq47423 Length=281 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||| | || ||||| ||||| || | || || ||||| || || || ||||| || | Sbjct 48 ACATGAGGCAAGCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGA 107 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG 21587 | || | || ||||| | ||||| || || | ||| || || || ||||||| || | Sbjct 108 AGGTGAGCCCTGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCG 167 Query 21588 AAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC 21633 ||||||| ||||||||||| || ||||| |||| | || ||| || Sbjct 168 AAAAGAAGATGCCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCC 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530218477554720