Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_007021.1 Length=130706 Score E Sequences producing significant alignments: (Bits) Value seq2714 159 3e-34 seq246949 111 1e-19 >seq2714 Length=540 Score = 159 bits (176), Expect = 3e-34 Identities = 328/487 (67%), Gaps = 3/487 (1%) Strand=Plus/Plus Query 82504 AAAAACGATTACGTAGATTGCAACGTAAGGTATCTCGTAAATACCAAAATAATAAAGAAG 82563 ||||| || | |||||| ||| | || |||| ||||| ||| |||||| ||| Sbjct 3 AAAAAAGACTGGATAGATTACAAAGAAAAATATCAAAAAAATATAAAATGAATAAACAAG 62 Query 82564 GGAGTACCTTTGTCAAAACTTGCAATATTATAAAACTTGAAAAACAAATTAAACTCTTAC 82623 | | | ||| | |||||| |||||||| ||| | ||||||||||||||||| | | Sbjct 63 GAAATTGTTTTATAAAAACTAATAATATTATTAAATTAGAAAAACAAATTAAACTTATTC 122 Query 82624 AACGAAGATTGTCTAACATTCGTAAAAACTATTTACATCAAACAACAACTTCTATAGTGA 82683 | ||| | | || || | || || || |||||||| ||| || ||| | | Sbjct 123 ATAGAAAGCTAGCAAATATAAGAAATAATCATATACATCAAGTAACTGCTAAAATAATTA 182 Query 82684 AAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAATGTAAGTGGTATGATGAAGAATA 82743 || ||||| ||| | || || |||||||| ||| ||||||| |||||||| |||| Sbjct 183 AATTAAAACCATATAGAGTGGTGATGGAAGATTTAAATATAAGTGGCATGATGAAAAATA 242 Query 82744 GACACTTAGCTAAAGCAATACAAAAACAAGGATTCTATGAGTTCCGTAAACAACTAGAAT 82803 || ||| | ||| || ||| ||||| ||| ||||| || | |||| | ||| Sbjct 243 AGCATTTATCAAAAAGTATTCAAGAACAAAAATTTTATGAATTTATAAGACAAATGAAAT 302 Query 82804 ATAAGTGTGGAAGAAAAGGTATAGAACTTGTTATTGCAGATAGATTCTTTCCTTCTAGTA 82863 |||| || | | || || || |||||| || |||||||| | ||| ||||| Sbjct 303 ATAAATGCGAATTTAATAAAATTAAATTTGTTAAAGCTGATAGATTTTATCCAAGTAGTA 362 Query 82864 AAACATGCTCTAATTGTGGTAACATCCACAAAAACTTAAAACTATCAGATAGAATATTTA 82923 ||| ||| ||| |||||| || | | ||| | ||||||||| ||||| | || || Sbjct 363 AAAGATGTTCTTGTTGTGGAAATGTAAAAAAAGATTTAAAACTAAGTGATAGGAAATATA 422 Query 82924 AGTG---TGACTGTGGTTTTAGTATTGATAGAGACCTTAATGCTAGTATTAATTTAGCTA 82980 | || ||| ||| | | ||| ||||| || ||||||||||| ||| | | | Sbjct 423 AATGTGATGAATGTAAAATGATTATGGATAGGGATAAAAATGCTAGTATAAATCTTTCAA 482 Query 82981 ATTATAA 82987 | ||||| Sbjct 483 AATATAA 489 >seq246949 Length=325 Score = 111 bits (122), Expect = 1e-19 Identities = 213/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 82542 AAATACCAAAATAATAAAGAAGGGAGTACCTTTGTCAAAACTTGCAATATTATAAAACTT 82601 ||||| ||| |||||| |||| | | ||| | |||||| |||||||| ||| | Sbjct 316 AAATATAAAATGAATAAACAAGGAAATTGTTTTATAAAAACTAATAATATTATTAAATTA 257 Query 82602 GAAAAACAAATTAAACTCTTACAACGAAGATTGTCTAACATTCGTAAAAACTATTTACAT 82661 ||||||||||||||||| | || ||| | | || || | || || || ||||| Sbjct 256 GAAAAACAAATTAAACTTATTCATAGAAAGCTAGCAAATATAAGAAATAATCATATACAT 197 Query 82662 CAAACAACAACTTCTATAGTGAAAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAAT 82721 ||| ||| || ||| | ||| ||||| ||| | || || |||||||| ||| Sbjct 196 CAAGTAACTGCTAAAATAATTAAATTAAAACCATATAGAGTGGTGATGGAAGATTTAAAT 137 Query 82722 GTAAGTGGTATGATGAAGAATAGACACTTAGCTAAAGCAATACAAAAACAAGGATTCTAT 82781 ||||||| |||||||| |||| || ||| | ||| || ||| ||||| ||| ||| Sbjct 136 ATAAGTGGCATGATGAAAAATAAGCATTTATCAAAAAGTATTCAAGAACAAAAATTTTAT 77 Query 82782 GAGTTCCGTAAACAACTAGAATATAAGTGTGGAAGAAAAGGTATAGAACTTGTTATTGCA 82841 || || | |||| | ||||||| || | | || || || |||||| || Sbjct 76 GAATTTATAAGACAAATGAAATATAAATGCGAATTTAATAAAATTAAATTTGTTAAAGCT 17 Query 82842 GATAGATTCTTTCC 82855 |||||||| | ||| Sbjct 16 GATAGATTTTATCC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416844966022636