Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq146718 127 2e-24 seq146719 116 4e-21 seq143707 107 2e-18 seq130988 105 6e-18 seq77635 104 2e-17 seq146721 102 8e-17 seq131321 89.7 5e-13 seq95674 89.7 5e-13 seq149515 86.0 6e-12 seq143705 86.0 6e-12 seq108713 84.2 2e-11 seq99093 84.2 2e-11 seq113039 82.4 7e-11 seq97263 82.4 7e-11 seq87097 82.4 7e-11 >seq146718 Length=320 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | |||||||| | |||||| | ||| | ||| | | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| || || || |||||||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||||| || || |||||||||||||||| | | | | ||||| ||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAACTCGAAGATGGTCGCACGCTTTCTGACTACAAC 205 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || ||||| || ||||| |||| || ||||| |||| Sbjct 206 ATCCAAAAGGAGTCTACCCTCCACCTTGTCCTCCGACT 243 >seq146719 Length=228 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | |||||||| | |||||| | ||| | ||| | | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| || || || |||||||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||||| || || |||||||||||||||| | | | | ||||| ||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAACTCGAAGATGGTCGCACGCTTTCTGACTACAAC 205 Query 26949 ATTCAAAAAGAATCTAC 26965 || ||||| || ||||| Sbjct 206 ATCCAAAAGGAGTCTAC 222 >seq143707 Length=308 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | ||||| | ||| | ||| ||| | Sbjct 255 ATGCAGATCTTCGTGAAGACTCTGACCGGTAAGACTATCACTCTTGAAGTTGAACCAAGC 196 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| |||||| | || || ||||| ||||||||||| || || ||||||||| Sbjct 195 GACAGTATCGAGAATGTGAAGACGAAGATCCAAGACAAAGAAGGCATCCCGCCCGATCAA 136 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||||| || ||||||||||| ||||||| | | | || ||||| ||| Sbjct 135 CAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGACTACAAC 76 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| ||||| || ||| | || || || || | | ||||| |||| Sbjct 75 ATTCAGAAAGAGTCCACTCTTCACCTTGTTCTTCGCTTGAGAGGTGGAA 27 >seq130988 Length=550 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || |||||| | ||||| | || | ||| ||| Sbjct 99 AATGCAAATTTTCGTGAAGACTCTGACCGGAAAAACCATCACTCTTGAGGTGGAACCAAG 158 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| ||||| | || || ||||| ||||||||||| || ||||| || || Sbjct 159 CGACACTATCGACAACGTGAAGACCAAGATCCAGGACAAAGAAGGTATCCCTCCAGACCA 218 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | | ||||| || || ||||||| ||| | | |||||||| || Sbjct 219 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTGAGCGACTACAA 278 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| || || || || |||||||||| || Sbjct 279 CATTCAGAAGGAGTCAACCCTCCATCTGGTGCT 311 >seq77635 Length=207 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 26771 GCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGA 26830 |||| | ||||| ||||||||||| |||||| | ||||| | || | ||| |||| || Sbjct 207 GCAAATATTTGTTAAAACATTAACGGGAAAAACAATCACTTTAGACGTTGAACCAAATGA 148 Query 26831 CACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACA 26890 ||||| | | || ||| ||| ||| || |||||||| || ||||| || ||||| Sbjct 147 TACCATACAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAGCAACA 88 Query 26891 AAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAACA 26949 | || | |||| | || |||||| | ||||||| | | | | | | | || || |||| Sbjct 87 ACGATTGATTTTTGCAGGAAAACAATTAGAAGATGGTCGTA-CATTATCTGATTACAACA 29 Query 26950 TTCAAAAAGAATCTAC 26965 | ||||||||||| || Sbjct 28 TCCAAAAAGAATCCAC 13 >seq146721 Length=214 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | |||||||| | |||||| | ||| | ||| | | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| || || || |||||||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||||| || || ||||| |||||||| | | | | | ||||| ||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAGCTCGAAGACGGACGTACCCTTTCTGACTACAAC 205 Query 26949 ATTCAAAAA 26957 || |||||| Sbjct 206 ATCCAAAAA 214 >seq131321 Length=300 Score = 89.7 bits (98), Expect = 5e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| |||||||||||||| ||| | || || | || | ||| |||| Sbjct 187 AATGCAAATATTTGTTAAAACATTAACTGGTAAAACAATTACATTAGATGTTGAAGCAAA 128 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || | | || ||| ||| || || |||||||| ||||| || || || Sbjct 127 TGATACAATACAAAATGTAAAAGCAAAAATACAAGATAAAGAAGGAATACCACCAGAACA 68 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||||||| | || | | || |||||| | || |||| ||| ||| | | | || |||| Sbjct 67 ACAAAGATTAATATTTGCAGGTAAACAATTAGAGGATGGTAG-AACATTATCTGATTATA 9 Query 26947 ACATTCAA 26954 | |||||| Sbjct 8 ATATTCAA 1 >seq95674 Length=384 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| ||| | || || || | ||||| | || | || || Sbjct 53 ATGCAGATCTTTGTAAAGACACTCACGGGGAAGACAATCACTTTGGAGGTTGAGCCATCA 112 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || ||||| ||||| || ||||| || || |||||| Sbjct 113 GACACCATTGAAAATGTAAAGGCGAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAA 172 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || |||| | ||||| || || ||||||| | | ||| | || || || Sbjct 173 CAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCA-CGTTGTCTGATTACAA 231 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| ||||| ||| | || ||||| ||| | ||||| ||||| Sbjct 232 CATTCAAAAGGAATCCACTCTTCACCTGGTGCTGCGTCTTAGGGGAGG 279 >seq149515 Length=449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| ||| | || ||| | ||| ||||| | | | Sbjct 17 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 76 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | || || |||||| ||||| ||||| || || || || ||| Sbjct 77 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 136 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || || ||||| | || |||| | | | | ||||||||||| Sbjct 137 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 196 Query 26949 ATTCAAAAAGAATCTAC 26965 || || || || ||||| Sbjct 197 ATCCAGAAGGAGTCTAC 213 >seq143705 Length=477 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| ||| | || ||| | ||| ||||| | | | Sbjct 437 ATGCAGATTTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 378 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | || || |||||| ||||| ||||| || || || || ||| Sbjct 377 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 318 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || || ||||| | || |||| | | | | ||||||||||| Sbjct 317 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 258 Query 26949 ATTCAAAAAGAATCTAC 26965 || || || || ||||| Sbjct 257 ATCCAGAAGGAGTCTAC 241 >seq108713 Length=694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| || || | || || ||| | |||||| | || | || | Sbjct 653 AAGATGCAGATCTTTGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAGGTTGAGGCC 594 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || || || || | || || || ||| ||||||||||| || ||||||||| Sbjct 593 AGTGATACTATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCTCCCGAT 534 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || |||| || || ||||| | ||||||| | | || |||||| Sbjct 533 CAACAACGTCTGATTTTCGCTGGGAAACAGTTGGAAGATGGCCGCACTCTCTCCGACTAC 474 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||| || ||||| || || |||| || || || | ||||| || ||| Sbjct 473 AACATCCAGAAAGAGTCCACCCTCCACCTCGTGCTTCGTCTTAGGGGCGGA 423 >seq99093 Length=221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26790 TTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAA 26849 ||||| || ||| | || || | || | ||| |||| || || || | | || ||| Sbjct 1 TTAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAA 60 Query 26850 CAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGC 26909 ||| ||| || |||||||| ||||| || || ||||||||| | || | | || Sbjct 61 GCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGT 120 Query 26910 AAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTAT 26968 |||||| | ||||||| | | | | | | || ||||| |||||||||||||| ||| | Sbjct 121 AAACAATTAGAAGATGGACGTA-CATTATCTGATTATAATATTCAAAAAGAATCGACTCT 179 Query 26969 CCATCTGGTCCTGAGACTTAGAGGAGGAAAAAT 27001 || |||| | || ||| |||| |||| ||| Sbjct 180 TCACTTGGTATTAAGGCTTCGAGGTGGAACAAT 212 >seq113039 Length=388 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 || |||||| | ||||| | || | ||| ||| |||||| ||||| | || || Sbjct 369 ACCGGAAAAACCATCACTCTTGAGGTGGAACCAAGCGACACTATCGACAACGTGAAGACC 310 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| ||||||||||| || ||||| || || || | ||||| | | || ||| Sbjct 309 AAGATCCAGGACAAAGAAGGTATCCCTCCAGACCAGCAGCGTCTCATCTTTGCCGACAAG 250 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTAC 26965 || || ||||| | | ||| | | |||||||||||||| || || || || || Sbjct 249 CAGCTGGAAGACGGTCGAACCCTGAGCGACTATAACATCCAGAAGGAGTCGAC 197 >seq97263 Length=533 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| | || ||||| | ||||| | || ||||| | Sbjct 494 AATGCAGATCTTCGTCAAAACTCTCACAGGAAAGACCATCACACTGGAGGTAGAAGCTTC 435 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || |||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 434 TGATACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCAGACCA 375 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| |||| || | || || ||||| ||||| |||| ||| | |||||||| Sbjct 374 ACAGCGACTGATCTTCGCTGGAAAACAGCTCGAGGATGGACGAACTCTGTCTGACTATAA 315 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| ||||| || || |||| || || || Sbjct 314 CATTCAGAAAGAGTCCACCCTCCACCTTGTGCT 282 >seq87097 Length=552 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| || ||||||||||||||| | || |||| || || ||||| | ||| Sbjct 51 GACAAAGAAGGTATCCCTCCCGATCAACAACGTCTGATTTTCGCTGGGAAACAGTTGGAA 110 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | | || |||||| ||||| || ||||| || || |||| || || || Sbjct 111 GATGGCCGCACTCTCTCCGACTACAACATCCAGAAAGAGTCCACCCTCCACCTCGTGCTT 170 Query 26982 AGACTTAGAGGAGGA 26996 | ||||| || ||| Sbjct 171 CGTCTTAGGGGCGGA 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477148462628160