Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq146719 105 6e-18 seq146718 104 2e-17 seq127998 104 2e-17 seq77635 102 7e-17 seq143707 96.9 3e-15 seq146721 95.1 1e-14 seq98341 93.3 4e-14 seq99092 91.5 1e-13 seq95674 89.7 4e-13 seq24851 89.7 4e-13 seq149514 87.8 2e-12 seq130988 87.8 2e-12 seq113038 87.8 2e-12 seq131321 86.0 5e-12 seq108713 82.4 7e-11 >seq146719 Length=228 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | |||||||| | || ||| | ||||| || || | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| || || || |||||||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| |||| || || || ||||||||||||| | | | || || ||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAACTCGAAGATGGTCGCACGCTTTCTGACTACAAC 205 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || ||||| |||| Sbjct 206 ATCCAAAAGGAGTCTACCCTTCA 228 >seq146718 Length=320 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | |||||||| | || ||| | ||||| || || | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| || || || |||||||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| |||| |||| || || || ||||||||||||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAACTCGAAGATG 182 >seq127998 Length=685 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || ||| | || ||| | || || || ||| | Sbjct 660 ATGCAGATCTTTGTGAAAACCCTGACAGGGAAAACTATCACCCTTGAGGTGGAA-CCATC 602 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | | ||||||| | || ||| |||||| || || ||||| || ||||| ||||| Sbjct 601 GGATTCCATCGAAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 542 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| |||| |||| | ||||||||||| ||||||| ||||| | ||||| || Sbjct 541 ACAGCGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTACAA 482 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||| || |||||||| || |||| | ||||| || Sbjct 481 CATACAGAAAGAATCCACTCTTCACCTTGTGTTGAG 446 >seq77635 Length=207 Score = 102 bits (112), Expect = 7e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 23993 GCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGA 24052 |||| | ||||| ||||||||||| |||||| | || || | || || || | || || Sbjct 207 GCAAATATTTGTTAAAACATTAACGGGAAAAACAATCACTTTAGACGTTGAACCAAATGA 148 Query 24053 CACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACA 24112 ||||| | | || ||| ||| ||| || |||||||| || ||||| || ||||| Sbjct 147 TACCATACAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAGCAACA 88 Query 24113 GAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACA 24171 || |||||| | || || ||| | ||||||| | || | | | ||||| |||| Sbjct 87 ACGATTGATTTTTGCAGGAAAACAATTAGAAGATGGTCG-TACATTATCTGATTACAACA 29 Query 24172 TTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||||||||| ||| | |||||||| Sbjct 28 TCCAAAAAGAATCCACATTACATTTAGT 1 >seq143707 Length=308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 ||||| || | | ||||| |||||| | || || ||||| |||||||||||| Sbjct 210 GAAGTTGAACCAAGCGACAGTATCGAGAATGTGAAGACGAAGATCCAAGACAAAGAAGGC 151 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || || |||||||||||| | || |||| || ||||| ||||| ||||||| | | | Sbjct 150 ATCCCGCCCGATCAACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACT 91 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGA 24215 | || || || |||||||| ||||| || || |||| | || | | |||||||| Sbjct 90 CTGAGTGACTACAACATTCAGAAAGAGTCCACTCTTCACCTTGTTCTTCGCTTGAGAGGT 31 Query 24216 GGA 24218 ||| Sbjct 30 GGA 28 >seq146721 Length=214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | |||||||| | || ||| | ||||| || || | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| || || || |||||||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| |||| |||| || || || || |||||||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAGCTCGAAGA 180 >seq98341 Length=429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 24055 CCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGA 24114 ||||||| | || ||| |||||| || || ||||| || ||||| ||||||||| Sbjct 12 CCATCGAAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAGC 71 Query 24115 GACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTC 24174 |||| |||| | ||||||||||| ||||||| ||||| | ||||| ||||| | Sbjct 72 GACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTACAACATAC 131 Query 24175 AAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 | |||||||| || |||| | ||||| || Sbjct 132 AGAAAGAATCCACTCTTCACCTTGTGTTGAG 162 >seq99092 Length=231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 24012 TTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAA 24071 ||||| || ||| | ||||| | || || || || || || || || | | || ||| Sbjct 1 TTAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAA 60 Query 24072 CAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGC 24131 ||| ||| || |||||||| ||||| || || ||||| ||| | || | | || Sbjct 61 GCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGT 120 Query 24132 AAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAAT 24190 || ||| | ||||||| | | | | | | |||||||| |||||||||||||| ||| | Sbjct 121 AAACAATTAGAAGATGGACGTA-CATTATCTGATTATAATATTCAAAAAGAATCAACATT 179 Query 24191 TCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||| | || ||||| || Sbjct 180 GCATTTAGTATTACGTTTAAGAGGTGG 206 >seq95674 Length=384 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| ||| | || || || | || || | || || ||| ||| | Sbjct 53 ATGCAGATCTTTGTAAAGACACTCACGGGGAAGACAATCACTTTGGAGGTTGAG-CCATC 111 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | || || ||||| ||||| || || || || || ||||| Sbjct 112 AGACACCATTGAAAATGTAAAGGCGAAGATCCAAGACAAGGAGGGGATCCCACCAGATCA 171 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| ||||||| | |||||||| || ||||||| | | |||| | ||||| | Sbjct 172 ACAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGCCG-CACGTTGTCTGATTACA 230 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 |||||||||| ||||| || |||| Sbjct 231 ACATTCAAAAGGAATCCACTCTTCA 255 >seq24851 Length=429 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||||||| ||||||| | || || ||| || Sbjct 306 ATGCAGATATTTGTCAAGACTCTGACTGGAAAAACGATTACTCTAGAGGTTGAGCCCTCT 247 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| |||||| || || || || || || || || || Sbjct 246 GATACCATAGAGAATGTCAAGTCCAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAG 187 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| | ||| ||||| || || |||| | | | | | ||||||||| Sbjct 186 CAGCGGCTAATTTTTGCCGGAAAGCAGCTAGAGGATGGCCGCACCCTTTCTGATTATAAC 127 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| ||||| Sbjct 126 ATTCAGAAAGAGTCTAC 110 >seq149514 Length=710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || ||| | || || || | | Sbjct 53 ATGCAGATCTTCGTGAAAACTCTGACGGGGAAAACCATCACCCTTGAGGTTGAACCTAGT 112 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | |||||| |||||| ||||| ||||| || || || || || Sbjct 113 GACTCTATTGAGAATGTCAAAACAAAGATCCAAGACAAGGAAGGAATTCCACCTGACCAG 172 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| | || || || || ||||||| ||| | || ||||||||| Sbjct 173 CAAAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTAGTGATTATAAC 232 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || || || ||||| | ||| | | ||||||||||| Sbjct 233 ATCCAGAAGGAGTCCACCCTTCATCTTGTGCTTCGCCTGAGAGGAGGA 280 >seq130988 Length=550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || |||||| | || || | || || || | | Sbjct 99 AATGCAAATTTTCGTGAAGACTCTGACCGGAAAAACCATCACTCTTGAGGTGGAACCAAG 158 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || || ||||| ||||||||||| || ||||| || || Sbjct 159 CGACACTATCGACAACGTGAAGACCAAGATCCAGGACAAAGAAGGTATCCCTCCAGACCA 218 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | |||||||| || ||||||| | ||| | | ||||| || || Sbjct 219 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTGAGCGACTACAA 278 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||| || || || || | ||| | ||| Sbjct 279 CATTCAGAAGGAGTCAACCCTCCATCTGGTG 309 >seq113038 Length=405 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || || || | || ||| | ||||| |||||| Sbjct 401 ATGCAGATCTTCGTCAAAACGTTGACAGGCAAGACCATCACCCTGGAAGTTGAGGCCTCT 342 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 341 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAG 282 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| || | | || ||||| | || |||| | | | | |||| || || ||| Sbjct 281 CAGCGACTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGTACCCTCAGTGACTACAAC 222 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 221 ATCCAGAAGGAATCCACCCTTCA 199 >seq131321 Length=300 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| ||| |||||| || || || ||| | ||||||| | | | || |||||| Sbjct 300 CAACAAAGATTGATTTTCGCTGGAAAACAATTAGAAGATGGACGTACTTTGAGTGATTAT 241 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||||||||| ||| | |||||||| |||||||| ||||| || Sbjct 240 AATATTCAAAAAGAATCAACATTACATTTAGTATTAAGATTAAGAGGTGG 191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| |||||||||||||| ||| | ||||| | || || || || || Sbjct 187 AATGCAAATATTTGTTAAAACATTAACTGGTAAAACAATTACATTAGATGTTGAAGCAAA 128 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || | | || ||| ||| || || |||||||| ||||| || || || Sbjct 127 TGATACAATACAAAATGTAAAAGCAAAAATACAAGATAAAGAAGGAATACCACCAGAACA 68 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| ||| | || | | || || ||| | || |||| || ||| | | | ||||||| Sbjct 67 ACAAAGATTAATATTTGCAGGTAAACAATTAGAGGATGGTAG-AACATTATCTGATTATA 9 Query 24169 ACATTCAA 24176 | |||||| Sbjct 8 ATATTCAA 1 >seq108713 Length=694 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | || || ||| | || ||| | || || |||||| Sbjct 653 AAGATGCAGATCTTTGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAGGTTGAGGCC 594 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | || || || || | || || || ||| ||||||||||| || ||||||||| Sbjct 593 AGTGATACTATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCTCCCGAT 534 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | ||||||| || || || || | ||||||| | | | || ||| || Sbjct 533 CAACAACGTCTGATTTTCGCTGGGAAACAGTTGGAAGATGGCCGCACTCTCTCCGACTAC 474 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 473 AACATCCAGAAAGAGTCCAC 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428610172499340