Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq130988 87.8 2e-12 seq99093 84.2 2e-11 seq149514 82.4 6e-11 >seq130988 Length=550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || || || || || ||||||||||| || | || ||| | || Sbjct 99 AATGCAAATTTTCGTGAAGACTCTGACCGGAAAAACCATCACTCTTGAGGTGGAACCAAG 158 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||||| | ||||| || || || || || |||||||| |||| || | Sbjct 159 CGACACT-ATCGACAACGTGAAGACCAAGATCCAGGACAAAGAAGGTATCCCTCCAGACC 217 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| | || || | ||| ||||| || | ||||||| | |||| || ||| || | Sbjct 218 AGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTGAGCGACTACA 277 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||| || ||||| || | ||| ||||| Sbjct 278 ACATTCAGAAGGAGTCAACCCTCCATCTGGTG 309 >seq99093 Length=221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 115361 GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTAT 115420 |||||| ||||||| ||||||||||| | || || || |||||| | || | | Sbjct 55 GTAAAAGCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTT 114 Query 115421 GCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCT 115480 || || |||||||||||||||| || | | |||||||| ||||||||||| || Sbjct 115 GCAGGTAAACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCG 174 Query 115481 ACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| | || |||| || || | ||||| |||| Sbjct 175 ACTCTTCACTTGGTATTAAGGCTTCGAGGTGGAA 208 >seq149514 Length=710 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||||| || ||||| |||||||| ||| | || || | || Sbjct 53 ATGCAGATCTTCGTGAAAACTCTGACGGGGAAAACCATCACCCTTGAGGTTGAACCTAGT 112 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || ||| ||| || || || ||||| | || ||| ||| Sbjct 113 GACTCTATTGAGAATGTCAAAACAAAGATCCAAGACAAGGAAGGAATTCCACCTGACCAG 172 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATG-ACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || ||||| | ||||||| || || | | | |||||||| Sbjct 173 CAAAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTAGT-GATTATAA 231 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||| || || ||||| || | ||| | ||| | | || |||||||| Sbjct 232 CATCCAGAAGGAGTCCACCCTTCATCTTGTGCTTCGCCTGAGAGGAGGA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424032333211360