Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq139941 302 5e-77 seq142104 298 6e-76 seq89999 140 4e-28 seq47423 84.2 2e-11 >seq139941 Length=1515 Score = 302 bits (334), Expect = 5e-77 Identities = 619/914 (68%), Gaps = 12/914 (1%) Strand=Plus/Minus Query 92785 TTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTT 92844 ||| |||| || || || |||||||| |||||| | || ||||| || |||||||| Sbjct 1169 TTACTCATCACGCCTGCCTTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTG 1110 Query 92845 CCTTCCAAAGATATCGAATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCA 92902 || ||||| || || | || | || | ||| || || || || ||| |||| Sbjct 1109 CCCTCCAAGGAAATGTTCTCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAG 1050 Query 92903 CCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 | | | | | || | ||| ||||| |||||||| |||||||| ||||||| Sbjct 1049 CAGTTGAGAGCAACCAGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTG 990 Query 92963 CAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 ||||| || | ||| || || || || || || | ||| |||| || || ||| Sbjct 989 TGGTTCATGCCGATAAGCTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACA 930 Query 93023 ACGGCTTCTTTCAAGAT---TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAA 93079 || || |||| | || || ||| ||| | | || |||||| | || | || Sbjct 929 ACAGCATCTTGGATTATCGATTTTATGACTTTT---TCTGATGGTTTGTTGACCAAGTAC 873 Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 | |||| | || |||||||| ||| | ||| ||||| || || | |||||| Sbjct 872 GAGAACATCATACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTT 813 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| |||| |||||| | | || | || || ||||| || || | ||||||| | Sbjct 812 GAGAAGGTTAGACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAA 753 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || |||||||| || ||||| || || || | || || || ||| Sbjct 752 CCAGAGAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCT 693 Query 93260 GAATTACTGC--TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 || ||| ||||||| || | ||||| | ||||||| | | | |||||| | || Sbjct 692 C--TTTCTGGGTTGATCCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTG 635 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | || || || || || || | | | || |||| || ||||| || || || | Sbjct 634 TCTCAATGGCATTGAAAAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCA 575 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||||| ||||||||||| |||| |||||| ||||| |||||||| || |||||||||| Sbjct 574 ACAGACTGTACATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATC 515 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 | || || | | || ||||| || ||| | ||| || | || ||||| || || | Sbjct 514 TCGCCTCTGGAACTTGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGC 455 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 ||||| || || || ||||| | | ||||| || |||| | |||||||| || Sbjct 454 CATCGCTAGCAGCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAA 395 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | ||| |||| || | |||||| |||||||||||||| ||| | ||||| || || | Sbjct 394 GTTTAGCCCAGTCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGG 335 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||| || ||||||||||| | ||| || |||| |||||| || |||| | ||||| | Sbjct 334 CTTCAGCCTTTTTGTACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 275 Query 93678 GATTAGGGTTATCT 93691 | | || || ||| Sbjct 274 GGTGTGGATTTTCT 261 >seq142104 Length=1514 Score = 298 bits (330), Expect = 6e-76 Identities = 618/914 (68%), Gaps = 12/914 (1%) Strand=Plus/Plus Query 92785 TTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTT 92844 ||| |||| || || || |||||||| |||||| | || ||||| || |||||||| Sbjct 346 TTACTCATCACGCCTGCCTTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTG 405 Query 92845 CCTTCCAAAGATATCGAATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCA 92902 || ||||| || || | || | || | ||| || || || || ||| |||| Sbjct 406 CCCTCCAAGGAAATGTTCTCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAG 465 Query 92903 CCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 | | | | | || | ||| ||||| |||||||| |||||||| ||||||| Sbjct 466 CAGTTGAGAGCAACCAGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTG 525 Query 92963 CAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 ||||| || | ||| || || || || || || | ||| |||| || || ||| Sbjct 526 TGGTTCATGCCGATAAGCTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACA 585 Query 93023 ACGGCTTCTTTCAAGAT---TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAA 93079 || || |||| | || || ||| ||| | | || |||||| | || | || Sbjct 586 ACAGCATCTTGGATTATCGATTTTATGACTTTT---TCTGATGGTTTGTTGACCAAGTAT 642 Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 | |||| | || |||||||| ||| | ||| ||||| || || | |||||| Sbjct 643 GAGAACATCATACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTT 702 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| |||| |||||| | | || | || || ||||| || || | ||||||| | Sbjct 703 GAGAAGGTTAGACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAA 762 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || |||||||| || ||||| || || || | || || || ||| Sbjct 763 CCAGAGAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCT 822 Query 93260 GAATTACTGC--TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 || ||| ||||||| || | ||||| | |||||| | | | |||||| | || Sbjct 823 C--TTTCTGGGTTGATCCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTG 880 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | || || || || || || | | | || |||| || ||||| || || || | Sbjct 881 TCTCAATGGCATTGAAAAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCA 940 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||||| ||||||||||| |||| |||||| ||||| |||||||| || |||||||||| Sbjct 941 ACAGACTGTACATTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATC 1000 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 | || || | | || ||||| || ||| | ||| || | || ||||| || || | Sbjct 1001 TCGCCTCTGGAACTTGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGC 1060 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 ||||| || || || ||||| | | ||||| || |||| | |||||||| || Sbjct 1061 CATCGCTAGCAGCGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAA 1120 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | ||| |||| || | |||||| |||||||||||||| ||| | ||||| || || | Sbjct 1121 GTTTAGCCCAGTCATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGG 1180 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||| || ||||||||||| | ||| || |||| |||||| || |||| | ||||| | Sbjct 1181 CTTCAGCCTTTTTGTACATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 1240 Query 93678 GATTAGGGTTATCT 93691 | | || || ||| Sbjct 1241 GGTGTGGATTTTCT 1254 >seq89999 Length=590 Score = 140 bits (154), Expect = 4e-28 Identities = 363/548 (66%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| ||||| || ||||||| ||| | ||||| || || || || | ||||||| Sbjct 46 GTACAGCAAGCAGGCGAAGTCGGCATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGA 105 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 || || | ||| || | || ||||| ||||| | ||| || |||| | ||| || Sbjct 106 AAAGGTCAGACCAGGCATCAAACCTCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCC 165 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || | || || ||||| || ||||||||||||| ||| || ||||| || | Sbjct 166 GCTGAATAGGATCCCCTCCACTGCCGCAAATGCCACAAGACGCTCAGCAAA----GCTGC 221 Query 93262 ATT-ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || || | | ||||||| | |||||| || || | | | || | || | Sbjct 222 TTTCACGGTTCATCCATTGGATGGCCCAACTAGCCTTCTCACGGACAGCTGGCATCGTGT 281 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 || || | || |||| || ||| | | || |||||| || || | || Sbjct 282 GAATGGCATCGAAGAGGTCGTCCTTCTCCTTTGGGTCCTTGATGTATTGCTCAATCAGCA 341 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || || | ||||| |||| || ||||| ||||||||||| |||||||| | | Sbjct 342 GCGAGTAGGTCTCAGAGTGGATGTTTTCCATGGCAATTTGGAAGCCGTAGAAGGCCCGGG 401 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCT-CTCTACGAGATTTTCATTGACTATACCA 93499 | || | ||||||||||| |||| ||| || || | | | || || |||||| || Sbjct 402 CCTCAGGAATCTGCACTTC-TGAGGAAAACTGCTGTGCCAAGTTCTCCAGGACTATGCCG 460 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||||| || |||||||| || | | |||||| | ||| || | ||| || |||| Sbjct 461 TCGGAGGCAGCAAAAAATGCAAGCACATGCTTGACAAAGTGCTGCTCGCTCTCGGTAAGG 520 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || ||||||| |||| || ||| |||| ||| || |||||||||| ||||| Sbjct 521 TTCACCCAATCCTTGTTGTCTTGTGCAAGGTCGATTTCCTCAGCAGTCCAAAAGGATGCC 580 Query 93620 TC-TGCTT 93626 || ||||| Sbjct 581 TCATGCTT 588 >seq47423 Length=281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTG 93139 ||||||| | ||| |||||||| || | || ||||| | || | |||||||||||| Sbjct 45 TGTACATGAGGCAAGCAAAGTCACAGTGAAGCCCCTCGTCCC-TGCTGATCAACTCATTG 103 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| || | ||||| | || |||| |||||||||||| || || || ||||| | Sbjct 104 GAGAAGGTGAGCCCTGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAA 163 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 || ||||| || || || || || || ||||| || | || | ||| |||| Sbjct 164 CCCGAAAAGAAGATGCCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCCAAA 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555099532818720