Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq119667 98.7 7e-16 seq25934 89.7 4e-13 seq99092 86.0 4e-12 seq71856 86.0 4e-12 seq71855 86.0 4e-12 >seq119667 Length=392 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| | || || |||| || |||||||||||| | || ||| || | Sbjct 24 ATGCAGATATTCGTGAAGACGCTAACCGGGAAAACCATTACCCTTGAGGTGGAGCCCTCT 83 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || || | || ||||| Sbjct 84 GATACTATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATCCCGCCCGACCAA 143 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||||||||| || ||||| ||||||||| || || |||||||||| Sbjct 144 CAACGCCTTATCTTTGCCGGGAAACAGCTAGAAGATGGTCGTACCCTGAGCGATTACAAT 203 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| | || | ||| |||| ||||| Sbjct 204 ATTCAGAAGGAATCCACCCTTCATCTTGTTCTTCGTCTACGTGGAGG 250 >seq25934 Length=298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||| | ||||||||||| || ||||| ||||||||| || || ||||| Sbjct 263 ACCAACAACGCCTTATCTTTGCCGGGAAACAGCTAGAAGATGGTCGTACCCTGAGCGATT 204 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||||| || |||||| | || | ||| |||| ||||| Sbjct 203 ACAATATTCAGAAGGAATCCACCCTTCATCTTGTTCTTCGTCTACGTGGAGG 152 >seq99092 Length=231 Score = 86.0 bits (94), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCT 21971 ||||||||| || |||||||| || |||| | | ||||| ||| | || ||||| Sbjct 59 AAGCAAAAA-TTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCA 117 Query 21972 GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 22031 || |||||| |||||||| | || | | ||||| |||||||| || ||||| || Sbjct 118 GGTAAACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCAACA 177 Query 22032 CTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||| | |||||||||||| |||| || Sbjct 178 TTGCATTTAGTATTACGTTTAAGAGGTGG 206 >seq71856 Length=271 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||| | || ||||||||||| || |||||||| ||| || || || | |||| Sbjct 221 ACCAACAACGTCTCATCTTTGCTGGTAAGCAACTAGAGGATGGAAGGACCCTGTCTGATT 162 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||||| |||||||| || || || ||| ||||||| | ||| ||||||| Sbjct 161 ATAATATACAGAAGGAGTCGACGCTGCATTTGGTATTGAGATTAAGAGGAGG 110 >seq71855 Length=408 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||| | || ||||||||||| || |||||||| ||| || || || | |||| Sbjct 358 ACCAACAACGTCTCATCTTTGCTGGTAAGCAACTAGAGGATGGAAGGACCCTGTCTGATT 299 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||||| |||||||| || || || ||| ||||||| | ||| ||||||| Sbjct 298 ATAATATACAGAAGGAGTCGACGCTGCATTTGGTATTGAGATTAAGAGGAGG 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357020422351912