Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq139941 187 5e-42 seq142104 183 6e-41 seq47423 145 1e-29 seq45252 118 2e-21 seq40275 96.9 7e-15 seq248530 91.5 3e-13 >seq139941 Length=1515 Score = 187 bits (206), Expect = 5e-42 Identities = 561/852 (66%), Gaps = 33/852 (4%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||| ||||| | |||| |||||| |||||||| | || || |||| || Sbjct 316 ATGTACAAAAAGGCTGAAGCCTCCTTCTGGACAGCCGAGGAAGTCGATCTTTCCAAAGAT 375 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | | | ||||| ||| || || | |||| || |||| |||| || | || || Sbjct 376 AAAGATGACTGGGCTAAACTTTCGGATGATGAAAGGTATTTCATCAAGCACGTTCTTGCT 435 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||| || || ||||| || ||||||||| ||| | || | | || Sbjct 436 TTCTTCGCTGCTAGCGATGGCATTGTGAATGAGAACTTGGTTGAGTGTTTTAGCCAGGAA 495 Query 42489 GTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 || || || | |||||| | || ||||| |||||||| ||||| |||||||| | || Sbjct 496 GTCCAAGTTCCA-GAGGCGAGATGTTTCTATGGCTTCCAAATAGCAATAGAGAATATCCA 554 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 |||||| ||||| | ||| | | | || ||||| ||| | | || || Sbjct 555 CTCTGAAATGTAC---AGTCTGTTGATTGAAACTTACATTGAGGACTCGGCTGAAA--AA 609 Query 42605 CGGG--CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | | || ||||| ||||| ||||| ||||| || ||| | || || | ||||| Sbjct 610 CAGCAACTTTTCAATGCCATTGAGACAATGCCTTGTGTCATGCGAAAAGCCCAGTGGGCC 669 Query 42663 CTCAACTGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || || |||||| | || || ||| | | || |||||| | || |||||| | Sbjct 670 CTGAATTGGATCAAC---CCAGAAAGAGCATCTTATGGTGAGAGGATAGTTGCCTTTGCT 726 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 || || || || ||||||||||| || | || || |||| |||||||| || ||| | Sbjct 727 GCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTCTGGCTAAAAAAGAGG 786 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | |||||| || || |||||||| || || |||||||| | |||||||| || ||| Sbjct 787 GGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGTGACGAGGGTCTTCAT 846 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCG 42898 | ||||||||||| | |||||||| | ||| |||| || || ||| || Sbjct 847 TGTGACTTTGCCTGTATGATGTTCTCGTACTTGGTCA---ACAAACCATCAGAAAAAG-T 902 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | | || ||| || || || | || || | || ||||| || | | || Sbjct 903 CATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAATTCCTTACAGAAGCCCT 962 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 || || || |||||||||||||| | ||| ||||||| | | || || Sbjct 963 TCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAACAGTACATTGAATTTGTTGC 1022 Query 43019 CGACCATCTCCTG--TGC---CAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 ||| || ||| ||| || || |||| | | ||||| | ||| Sbjct 1023 TGACAGACTTCTGGTTGCTCTCAACTG---CTCAAAGG--TTTACAATGCTAAAAACCCA 1077 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 || ||||| ||||||||||| || |||||||||||||| |||||||| |||||| | || Sbjct 1078 TTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACTTTTTTGAGAAGAGAGTT 1137 Query 43134 GCCGACTACCAG 43145 | || |||||| Sbjct 1138 GGAGAATACCAG 1149 >seq142104 Length=1514 Score = 183 bits (202), Expect = 6e-41 Identities = 560/852 (66%), Gaps = 33/852 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||| ||||| | |||| |||||| |||||||| | || || |||| || Sbjct 1199 ATGTACAAAAAGGCTGAAGCCTCCTTCTGGACAGCCGAGGAAGTCGATCTTTCCAAAGAT 1140 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | | | ||||| ||| || || | |||| || |||| |||| || | || || Sbjct 1139 AAAGATGACTGGGCTAAACTTTCGGATGATGAAAGGTATTTCATCAAGCACGTTCTTGCT 1080 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||| || || ||||| || ||||||||| ||| | || | | || Sbjct 1079 TTCTTCGCTGCTAGCGATGGCATTGTGAATGAGAACTTGGTTGAGTGTTTTAGCCAGGAA 1020 Query 42489 GTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 || || || | |||||| | || ||||| |||||||| ||||| |||||||| | || Sbjct 1019 GTCCAAGTTCCA-GAGGCGAGATGTTTCTATGGCTTCCAAATAGCAATAGAGAATATCCA 961 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 |||||| ||||| | ||| | | | || ||||| ||| | | || || Sbjct 960 CTCTGAAATGTAC---AGTCTGTTGATTGAAACTTACATTGAGGACTCGGCTGAAA--AA 906 Query 42605 CGGG--CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | | || ||||| ||||| ||||| ||||| || ||| | || || | ||||| Sbjct 905 CAGCAACTTTTCAATGCCATTGAGACAATGCCTTGTGTCATGCGAAAAGCTCAGTGGGCC 846 Query 42663 CTCAACTGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || || |||||| | || || ||| | | || |||||| | || |||||| | Sbjct 845 CTGAATTGGATCAAC---CCAGAAAGAGCATCTTATGGTGAGAGGATAGTTGCCTTTGCT 789 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 || || || || ||||||||||| || | || || |||| |||||||| || ||| | Sbjct 788 GCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTCTGGCTAAAAAAGAGG 729 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | |||||| || || |||||||| || || |||||||| | |||||||| || ||| Sbjct 728 GGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGTGACGAGGGTCTTCAT 669 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCG 42898 | ||||||||||| | ||||||| | ||| |||| || || ||| || Sbjct 668 TGTGACTTTGCCTGTATGATGTTCTCATACTTGGTCA---ACAAACCATCAGAAAAAG-T 613 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | | || ||| || || || | || || | || ||||| || | | || Sbjct 612 CATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAATTCCTTACAGAAGCCCT 553 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 || || || |||||||||||||| | ||| ||||||| | | || || Sbjct 552 TCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAACAGTACATTGAATTTGTTGC 493 Query 43019 CGACCATCTCCTG--TGC---CAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 ||| || ||| ||| || || |||| | | ||||| | ||| Sbjct 492 TGACAGACTTCTGGTTGCTCTCAACTG---CTCAAAGG--TTTACAATGCTAAAAACCCA 438 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 || ||||| ||||||||||| || |||||||||||||| |||||||| |||||| | || Sbjct 437 TTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACTTTTTTGAGAAGAGAGTT 378 Query 43134 GCCGACTACCAG 43145 | || |||||| Sbjct 377 GGAGAATACCAG 366 >seq47423 Length=281 Score = 145 bits (160), Expect = 1e-29 Identities = 176/235 (75%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 42630 ATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC--G 42687 |||||||| ||||||||||||| |||||||| | | ||||| || | | | Sbjct 279 ATGCCCTGTGTCAAGAAGAAGGCAGACTGGGCCTTGCAGTGGATTTCT--TCACAAACGG 222 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 | | || || || || | | |||||| |||| || |||||||||||||| ||||| Sbjct 221 CCTCCTTTGGAGAAAGAGTTATTGCCTTTGCCGCAGTTGAGGGCATCTTCTTTTCGGGTT 162 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCG 42806 | || || || || |||||||||||| | | |||| || ||||| || ||||||||||| Sbjct 161 CATTTGCATCTATTTTCTGGCTCAAGAAAAGAGGTCTC-ATGCCAGGGCTCACCTTCTCC 103 Query 42807 AACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 || || | |||||||||||||||||||| || | |||||||| |||||| ||| Sbjct 102 AATGAGTTGATCAGCAGGGACGAGGGGCTTCACTGTGACTTTGCTTGCCTCATGT 48 >seq45252 Length=640 Score = 118 bits (130), Expect = 2e-21 Identities = 310/469 (66%), Gaps = 22/469 (5%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||||| |||||||| || | |||||| | || ||||| ||||| || Sbjct 518 GCCAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGTATTCGATGATCTCCGTGCACAGA 459 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG-GCGTTGCAGGCGTCCTT 244806 || ||| | ||||||||||| || ||| |||||||||||| | | ||| | ||||| Sbjct 458 TTGGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGGACTTGCGATTGGCATG-ATCCTT 400 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| |||||| | || || ||||| | ||| || | | | || ||| | | Sbjct 399 GTACAGCATGTAAGGAGTGCCCGTCTCCATCTGCGCCTCCACAATGCGCGACCACAAATG 340 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT-CTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||| |||||| | ||| |||| |||| | || || ||| ||| || | Sbjct 339 CTGAGCCTTCACCGTCTTCCGA-CCTTTCCCTGCAGCTTCCAAGCTCAGGTAGAGCCGAT 281 Query 244926 CGAACTCGGGGCCCCAGACCT-CGTCTAG----GCCGGGGCACGACGCC----------- 244969 ||| || ||| ||| | | || || || || | || || | Sbjct 280 TGAAGTCCTCGCCAAAGAGATCCATCAAGCCCTTCCCGGTCTCGTCGTCGTAGGACTCGT 221 Query 244970 --GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGA 245027 ||||| | || |||| || || | ||||||| | | ||||||||| || || | Sbjct 220 TGGGGCAAAACAGGGTCCAGTCCGCGTCCGCCTTGACACGTTCCATGAAGAGATCCGGCA 161 Query 245028 TCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCA 245087 ||| ||| | | |||||| ||||||| | |||||| ||| |||| ||| || | | Sbjct 160 CCCAAAGGCCATAGAAGAGATCCCTGGCACGCTGCTCCTCCTTGCCATGGTTTTTACGAA 101 Query 245088 GCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||||||| || || || || ||| | ||||| || |||| |||||| || Sbjct 100 GCTCCAAGAACTCGAAAACATCGGCATGCCATGGTTCCAGGTAGACTGC 52 >seq40275 Length=336 Score = 96.9 bits (106), Expect = 7e-15 Identities = 220/328 (67%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| | ||||||| ||| |||| | ||||| |||| ||||| |||||| | || Sbjct 326 GATGTTCAAGGACTGGGACTGATCGATGTAGGGCCCCCGATCTGCTGCCATGTCCAGGAC 267 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| ||||| | ||||||| |||| ||| | || || || || Sbjct 266 GATCTTCTGCTTGATCTCCCAGACCGTCTTATAGAGTTCCTTCATGTCTTCTGGCAAA-- 209 Query 243994 TTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCA 244053 || | |||||||| || |||||| |||| | ||| || || | | || ||||| Sbjct 208 -TCCAACTTCTGCACACTTCCATTGTGGGCGATCAACTGTGTCCGAAGCTCCTCATTCCA 150 Query 244054 CAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGA 244113 |||||| | || ||| | ||||| | |||||| |||||||||||| Sbjct 149 AAGGCCCTGGGCAATGAGGTCCTTCAAAAGGTGACGATTCACCTGAACAAACTCTCCCGA 90 Query 244114 CAGCACGCGGCGCTGGTAGAGGTTGCTGC-TGAGCGGCTCGATGCTCTCCGTGTTGCCCA 244172 ||||| |||||| |||||||| ||| || ||||||| | ||| |||| |||| Sbjct 89 GAGCACACGGCGCACATAGAGGTT-TTGCGTGTAGGGCTCGAAGGACTCGTTGTTCCCCA 31 Query 244173 GTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 | ||||| || ||| || || ||||| Sbjct 30 GGATCTGTGCGGTGGAGGCTGTGGGCAT 3 >seq248530 Length=247 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||| ||||| || || || || ||||| | | ||||| ||||||| || || Sbjct 30 GTTCACAACCTGGAAGTCACCGGAGAGCACTCTCCTAGTGTAGATGTTGCTGGTGTATGG 89 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| ||| ||| ||||||| || ||||| |||||| || || |||||||| | || Sbjct 90 CTCAATGGACTCATTGTTGCCAAGGATCTGTGCCGTGGAGGCTGTTGGCATGGGAGCCAA 149 Query 244210 CAGCAGACTGTTCCTCACGCCGTGC 244234 |||| |||||||||||||| ||| Sbjct 150 AAGCAAGCTGTTCCTCACGCCATGC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941352396761280