Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq43933 98.7 9e-16 seq96271 91.5 1e-13 seq96269 91.5 1e-13 >seq43933 Length=829 Score = 98.7 bits (108), Expect = 9e-16 Identities = 182/264 (69%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 20495 CCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGG 20554 ||||| || || ||||||| | | |||| |||| |||||||||||| | ||||||| Sbjct 42 CCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAAGTGGCGCCACTGG 101 Query 20555 AAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGG 20614 || ||||| ||||| |||| || || ||| | || ||| ||||||| | ||||| Sbjct 102 AAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCCGCGCTTGTCCAGG 161 Query 20615 AACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCT---TGAAAGCTCCCTG 20671 ||||| | ||||| || ||||| ||| | || || |||| | ||| | || Sbjct 162 AACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACC-CTTCTCGGTCAAA--TGGTTG 218 Query 20672 GAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACC 20731 | || ||| || || | ||||| |||| |||| || || || ||||| || || Sbjct 219 GCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCACGCCAGAAGACG 278 Query 20732 CGCTTTGTGGTTAGTAAGGGAAAG 20755 ||||| || || |||| || ||| Sbjct 279 CGCTTGGTCGTCAGTAGTGGGAAG 302 >seq96271 Length=453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20198 TGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGC 20257 || |||||||||| || || | ||| || || || | | ||| ||||| || | | Sbjct 171 TGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACATGTGCTATC 112 Query 20258 ATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCC 20317 | | || | |||||||| |||||||||||||| || || |||| |||||||| || Sbjct 111 AGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCG 52 Query 20318 GACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG 20367 || || ||||| |||||||| || ||||| || | || |||||||| Sbjct 51 GATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGACGTAAAATTG 2 >seq96269 Length=446 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20198 TGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGC 20257 || |||||||||| || || | ||| || || || | | ||| ||||| || | | Sbjct 276 TGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACATGTGCTATC 335 Query 20258 ATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCC 20317 | | || | |||||||| |||||||||||||| || || |||| |||||||| || Sbjct 336 AGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCG 395 Query 20318 GACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG 20367 || || ||||| |||||||| || ||||| || | || |||||||| Sbjct 396 GATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGACGTAAAATTG 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439976804039520