Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq71855 89.7 4e-13 seq95674 87.8 1e-12 seq24851 87.8 1e-12 >seq71855 Length=408 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/123 (78%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | || |||| ||||| || | |||| |||||||||||||||| Sbjct 11 CAAT-GACACCACCGCGAAGACGCAACACCAAGTGCAACGTGGACTCCTTCTGAATGTTG 69 Query 33952 TAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || |||| || || || | || ||||| |||||||| ||||| |||||||||||||| Sbjct 70 TAGTCTG-AAAGGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTG 128 Query 34011 ATC 34013 ||| Sbjct 129 ATC 131 >seq95674 Length=384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || ||||||||||| ||||| ||| ||||| |||||||||||||| | | Sbjct 279 CCTCCCCTAAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAC 220 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||| ||||| ||||| | ||| ||||| Sbjct 219 AACGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATCAGCCTCTGTTGATC 167 >seq24851 Length=429 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || ||||||||||| ||||| ||| ||||| |||||||||||||| | | Sbjct 308 CCTCCCCTAAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAC 367 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||| ||||| ||||| | ||| ||||| Sbjct 368 AACGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATCAGCCTCTGTTGATC 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395837947408456