Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq92029 116 4e-21 seq89999 116 4e-21 seq142104 113 5e-20 seq139941 113 5e-20 seq90861 104 3e-17 seq47423 104 3e-17 seq8698 95.1 1e-14 seq248530 89.7 6e-13 seq48637 87.8 2e-12 seq45252 87.8 2e-12 seq40275 87.8 2e-12 >seq92029 Length=736 Score = 116 bits (128), Expect = 4e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 ||||| || || || || |||||||| ||||| || ||| ||| || ||||| | ||| Sbjct 335 TGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCT 276 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||||||||||||||| ||||| || || || ||| | ||| |||||||| | Sbjct 275 CGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCC 216 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || | ||||||||||||||| Sbjct 215 GCAAATGCCACAAGACGCTCAGCAAAG 189 >seq89999 Length=590 Score = 116 bits (128), Expect = 4e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 ||||| || || || || |||||||| ||||| || ||| ||| || ||||| | ||| Sbjct 71 TGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCT 130 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||||||||||||||| ||||| || || || ||| | ||| |||||||| | Sbjct 131 CGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCC 190 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || | ||||||||||||||| Sbjct 191 GCAAATGCCACAAGACGCTCAGCAAAG 217 >seq142104 Length=1514 Score = 113 bits (124), Expect = 5e-20 Identities = 180/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || || |||||||||||||| |||||| ||||| |||||| || || Sbjct 657 GGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACC 716 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| |||| ||| || | ||||||||| ||| ||| ||||| ||||||||||| Sbjct 717 TGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGAT 776 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCA-AAGGAGCGCGACTTTGTGTCAA 126224 ||| |||||| || || |||| | | |||| || ||| || | | || || | Sbjct 777 TCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTC-TTTCTGGGTTGA 835 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 126284 ||| |||| |||||||| || ||| | || ||| || | |||| || || | | Sbjct 836 TCCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGA 895 Query 126285 AGAGTTCCTTCTTTTC 126300 | |||| || ||||| Sbjct 896 AAAGTTGCTGTTTTTC 911 >seq139941 Length=1515 Score = 113 bits (124), Expect = 5e-20 Identities = 180/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || || |||||||||||||| |||||| ||||| |||||| || || Sbjct 858 GGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACC 799 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| |||| ||| || | ||||||||| ||| ||| ||||| ||||||||||| Sbjct 798 TGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGAT 739 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCA-AAGGAGCGCGACTTTGTGTCAA 126224 ||| |||||| || || |||| | | |||| || ||| || | | || || | Sbjct 738 TCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTC-TTTCTGGGTTGA 680 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 126284 ||| |||| |||||||| || ||| | || ||| || | |||| || || | | Sbjct 679 TCCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGA 620 Query 126285 AGAGTTCCTTCTTTTC 126300 | |||| || ||||| Sbjct 619 AAAGTTGCTGTTTTTC 604 >seq90861 Length=362 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || |||||||| || | ||||| | || ||||||||||| || ||||||||||| ||| Sbjct 253 TGAAGACCCTCATCTCTTGAGATCAACTCGTTCGAGAAGCAAAGCCCTGGCATGAGGCCC 194 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 | ||||||||||||| | || || |||||||| || ||||| | ||||||||| Sbjct 193 CTCTTCTTCAACCAGTAGATGGCGCAAAATGATCCACTGAAGAGCACTCCCTCCACCGCG 134 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || | || || || |||||| Sbjct 133 GCAAAGGCCACGATGCGTTCTGCAAAG 107 >seq47423 Length=281 Score = 104 bits (114), Expect = 3e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| | | ||| | ||||| |||||| || ||| Sbjct 59 GCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGAAGGTGAGCCCT 118 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| | ||||| | ||||||||| | |||||||||||| |||||||| Sbjct 119 GGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCGAAAAGAAGATG 178 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTG--TCAA 126224 ||||| || || || |||| | | || |||||||| || |||||| || Sbjct 179 CCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCCAAAGGAGGCCG--TTTGTGAAGAAA 236 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 126264 ||||| || ||||| | ||||| |||| || ||| || Sbjct 237 TCCACTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAGGG 276 >seq8698 Length=528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/207 (71%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||||| || ||||||||||| ||||| || | ||| || |||||| Sbjct 195 GTACTCGCCAACCCTTTTTTCGAAGAAGTTGGTCTTGCCCTGCAAAGAAATCAGCTCCAT 254 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA----TTGTTGGCACCCCAATCTGTTTGAGGA 125873 | || ||||| |||| |||| ||||| ||| || |||| | |||| ||| | Sbjct 255 CCAGTCGAATGGATTCTCTGAG--CCAAAGATCTTGCTGTGACCCAAGGCTGT--GAGAA 310 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 ||||||| | || |||||||||||| || |||| || ||||||||| ||||||| Sbjct 311 GACGATCAGCCACAAACTCAATGTACTGAGTCATCAGGTCCTTGTTCATACCAATGAGGT 370 Query 125934 TACATGGGAGCGCGTCCA-AGATGAAC 125959 ||| | || || |||| | |||||| Sbjct 371 CACAGGAAAGGGC-TCCACAAATGAAC 396 >seq248530 Length=247 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||||||||||| | |||||||||| || | ||| || || |||||| Sbjct 70 TAGATGTTGCTGGTGTATGGCTCAATGGACTCATTGTTGCCAAGGATCTGTGCCGTGGAG 129 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||| |||||||| |||| || | |||||| Sbjct 130 GCTGTTGGCATGGGAGCCAAAAGCAAGCTGTT 161 >seq48637 Length=361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 204/304 (67%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 114280 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 114339 |||| |||| || ||||| || || || | || | || || |||| ||| || || Sbjct 50 AAATGCATCGGCCAGACCCTGAACCCCCAAACCCACAGGTCGGTGTCGCATGTTGGAACG 109 Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 ||| || ||||||| | || | |||| || || ||| | || ||||| ||||| || Sbjct 110 TCGGGCTTCCTCCACGAGGTAGTAGTTCCGGTCAATGACCTTGTTCAGATTCTTGGTCAC 169 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA-GTCTCTTCA---TTGA 114455 ||||| || | || | ||||| | | | ||| | | || ||| |||| ||| Sbjct 170 CACCTTAGTCACCTCGTAGAGCTTCTGGAAGTCATA---GGGACGTC-CTTCGGTGTTGG 225 Query 114456 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 114515 | | | || | |||||| || |||| ||| || || | ||| || | | |||| Sbjct 226 CGAAGGTCGGTAAGGCGATGGAAGCCAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGT 285 Query 114516 ACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTG 114575 | || || || ||||| |||| ||| || | | |||||||||||||||| ||||| | Sbjct 286 ATTCGATGATCTCCGTGCACAGATTGGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGG 345 Query 114576 ACTT 114579 |||| Sbjct 346 ACTT 349 >seq45252 Length=640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/266 (69%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 |||| || || ||| | || ||||| ||||| || ||||| || | || | ||||| Sbjct 632 TTCCGGTCAATGACCTTGTTCAGATTCTTGGTCACCACCTTAGTCACCTCGTAGAGCTTC 573 Query 114425 TCGTAATCAAAACTGCGA-GTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 114480 | | | ||| | | || ||| |||| ||| | | | || | |||||| || || Sbjct 572 TGGAAGTCATA---GGGACGTC-CTTCGGTGTTGGCGAAGGTCGGTAAGGCGATGGAAGC 517 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 || ||| || || | ||| || | | ||||| || || || ||||| |||| ||| Sbjct 516 CAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGTATTCGATGATCTCCGTGCACAGATT 457 Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT-TGTGTTACACGCATCCTTGT 114599 || | | |||||||||||||||| ||||| ||||| | | || | |||||||| Sbjct 456 GGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGGACTTGCGATTGGCATG-ATCCTTGT 398 Query 114600 AAAGCATGTATGGCGTCCCCGTCTCC 114625 | |||||||| || || ||||||||| Sbjct 397 ACAGCATGTAAGGAGTGCCCGTCTCC 372 >seq40275 Length=336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 113880 TGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 113939 |||| |||| || || || ||| || ||||||||| |||| ||| || | || Sbjct 135 TGAGGTCCTTCAAAAGGTGACGATTCACCTGAACAAACTCTCCCGAGAGCACACGGCGCA 76 Query 113940 GATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGG 113999 ||||| || |||||| ||||| ||| |||| ||||| |||| ||| || ||||||| Sbjct 75 CATAGAGGTTTTGCGTGTAGGGCTCGAAGGACTCGTTGTTCCCCAGGATCTGTGCGGTGG 16 Query 114000 AGGCTGTGGGCAT 114012 ||||||||||||| Sbjct 15 AGGCTGTGGGCAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595464260166240