Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_011167.1 Length=53104 Score E Sequences producing significant alignments: (Bits) Value seq2714 174 5e-39 seq246949 143 9e-30 >seq2714 Length=540 Score = 174 bits (192), Expect = 5e-39 Identities = 313/454 (69%), Gaps = 5/454 (1%) Strand=Plus/Minus Query 41984 TAATTGATAATATGATAAGTTGATAGATGCATTTAAATCCCTATCCATTACAAGACCGCA 42043 ||||| ||| | ||| | || ||| |||||| |||||||||||| | | || Sbjct 493 TAATTTATATTTTGAAAGATTTATACTAGCATTTTTATCCCTATCCATAATCATTTTACA 434 Query 42044 ---ATCACAGCGATATACTCGGTCAGATAACTTTAGGTCTTTCTTAACGCTTCCACAACA 42100 |||||| |||| | ||| || |||| ||||| || || |||||||||| Sbjct 433 TTCATCACATTTATATTTCCTATCACTTAGTTTTAAATCTTTTTTTACATTTCCACAACA 374 Query 42101 TGAACACATTTTAGAAGATGGATACCATCTATCAGCTTCAATGAACTCAATACCATATTT 42160 ||||| ||||| | |||||| |||||||||||| || || | ||| || Sbjct 373 AGAACATCTTTTACTACTTGGATAAAATCTATCAGCTTTAACAAATTTAATTTTATTAAA 314 Query 42161 TTCACACTTATATTTCATTTGTCGTTTAAACTCATGAAGTTTTTGAT-TAGCAAACGCTT 42219 ||| || |||||||||||||||| | |||| |||| || |||||| | | | | || || Sbjct 313 TTCGCATTTATATTTCATTTGTCTTATAAATTCATAAAATTTTTGTTCTTGAATAC-TTT 255 Query 42220 TAGATAAGTGTTTATTCTTCATCATCCCTTTAATATTTAAAGTTTCCATTACAATTCGAT 42279 | ||||| || ||||| |||||||| || | ||||||||| |||||| || | || || Sbjct 254 TTGATAAATGCTTATTTTTCATCATGCCACTTATATTTAAATCTTCCATCACCACTCTAT 195 Query 42280 ATGGTTTGGTTTTCACGATATCGTTTGTCGTTTGATGAAGATGGTTGGTTCTGATATTTG 42339 ||||||| ||| | || | || |||||| | ||| || |||| ||||||| Sbjct 194 ATGGTTTTAATTTAATTATTTTAGCAGTTACTTGATGTATATGATTATTTCTTATATTTG 135 Query 42340 ATAATCTTCTATGCAAGTGTTGTATCTCATTTTCGATTTTTATAATGTTGCTCGTTTTGA 42399 || ||||||| | ||| || | ||||| | ||| ||||| || | ||||| | Sbjct 134 CTAGCTTTCTATGAATAAGTTTAATTTGTTTTTCTAATTTAATAATATTATTAGTTTTTA 75 Query 42400 CGAAACGGTTCCCCTCCTTATTCATTTTGTATTT 42433 |||| || || | ||||||||||| ||||| Sbjct 74 TAAAACAATTTCCTTGTTTATTCATTTTATATTT 41 >seq246949 Length=325 Score = 143 bits (158), Expect = 9e-30 Identities = 223/316 (71%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 42119 TGGATACCATCTATCAGCTTCAATGAACTCAATACCATATTTTTCACACTTATATTTCAT 42178 |||||| |||||||||||| || || | ||| || ||| || ||||||||||| Sbjct 2 TGGATAAAATCTATCAGCTTTAACAAATTTAATTTTATTAAATTCGCATTTATATTTCAT 61 Query 42179 TTGTCGTTTAAACTCATGAAGTTTTTGAT-TAGCAAACGCTTTAGATAAGTGTTTATTCT 42237 ||||| | |||| |||| || |||||| | | | | || ||| ||||| || ||||| | Sbjct 62 TTGTCTTATAAATTCATAAAATTTTTGTTCTTGAATAC-TTTTTGATAAATGCTTATTTT 120 Query 42238 TCATCATCCCTTTAATATTTAAAGTTTCCATTACAATTCGATATGGTTTGGTTTTCACGA 42297 ||||||| || | ||||||||| |||||| || | || ||||||||| ||| | | Sbjct 121 TCATCATGCCACTTATATTTAAATCTTCCATCACCACTCTATATGGTTTTAATTTAATTA 180 Query 42298 TATCGTTTGTCGTTTGATGAAGATGGTTGGTTCTGATATTTGATAATCTTCTATGCAAGT 42357 | | || |||||| | ||| || |||| ||||||| || ||||||| | Sbjct 181 TTTTAGCAGTTACTTGATGTATATGATTATTTCTTATATTTGCTAGCTTTCTATGAATAA 240 Query 42358 GTTGTATCTCATTTTCGATTTTTATAATGTTGCTCGTTTTGACGAAACGGTTCCCCTCCT 42417 ||| || | ||||| | ||| ||||| || | ||||| | |||| || || | | Sbjct 241 GTTTAATTTGTTTTTCTAATTTAATAATATTATTAGTTTTTATAAAACAATTTCCTTGTT 300 Query 42418 TATTCATTTTGTATTT 42433 |||||||||| ||||| Sbjct 301 TATTCATTTTATATTT 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169300967013776