Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq45252 131 2e-25 seq248530 102 8e-17 seq250921 82.4 8e-11 >seq45252 Length=640 Score = 131 bits (144), Expect = 2e-25 Identities = 352/526 (67%), Gaps = 28/526 (5%) Strand=Plus/Plus Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 |||| | || ||||| || ||||| || | | | ||||| |||| || ||||| || | Sbjct 5 CGGCCAGGTATGTGGATCAAGGTGGAGGTAAGCGCAAGGGAGCTTTGGCAGTCTACCTGG 64 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 | || ||||| || || || | ||| | || || || || ||||| ||||| || Sbjct 65 AACCATGGCATGCCGATGTTTTCGAGTTCTTGGAGCTTCGTAAAAACCATGGCAAGGAGG 124 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 | || | ||||| || |||||||| | || |||||||| || || || ||| |||| | Sbjct 125 AGCAGCGTGCCAGGGATCTCTTCTATGGCCTTTGGGTGCCGGATCTCTTCATGGAACGTG 184 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCC--CG--GACT-GTC 94370 || || || | | ||||| || ||||| ||||| || |||| || ||| | | Sbjct 185 TCAAGGCGGACGCGGACTGGACCCTGTTTTGCCCCAACGA--GTCCTACGACGACGAGAC 242 Query 94371 CGAC----GTTTG-TGGATCGCGTTTT-GAAGACTTGTAT--GCTC-------GTTACGA 94415 || | ||| |||||| | || || ||||| || |||| | | || Sbjct 243 CGGGAAGGGCTTGATGGATCTCTTTGGCGAGGACTTCAATCGGCTCTACCTGAGCTTGGA 302 Query 94416 ATC-GCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGG 94474 | | |||||| |||| | ||||| || | ||| | | ||||| | || |||| Sbjct 303 AGCTGCAGGGAAAGGTC-GGAAGACGGTGAAGGCTCAGCATTTGTGGTCGCGCATTGTGG 361 Query 94475 ACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGT 94534 | | ||| |||||||||| || || ||||| ||| |||||| || ||| ||||| Sbjct 362 AGGCGCAGATGGAGACGGGCACTCCTTACATGCTGTACAAGGATCATGCCAATCGCAAGT 421 Query 94535 CCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGT 94594 |||| |||||| || | || ||| | |||| ||||||||||| ||||| |||| Sbjct 422 CCAATCAGCAGAACTTGGGCACCATCCACTGCTCCAATCTGTGCACGGAGATCATCGA-- 479 Query 94595 ATACTTCTCCG--GACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 |||| | ||| |||||| | || || || || ||| |||||| Sbjct 480 ATACACCGCCGACGACGAGGTGGCGGTCTGCAATTTGGCTTCCATC 525 >seq248530 Length=247 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 95096 TGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGT 95155 ||||| |||| |||||||| || ||||||||||| ||||||||||||||||| ||||| Sbjct 154 TGCTTTTGGCTCCCATGCCAACAGCCTCCACGGCACAGATCCTTGGCAACAATGAGTCCA 95 Query 95156 TCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 | || || | |||| |||| | |||| ||| | |||||| |||| || |||| Sbjct 94 TTGAGCCATACACCAGCAACATCTACACTAGGAGAGTGCTCTCCGGTGACTTCC 41 >seq250921 Length=235 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || |||||||||||||| || || || || || |||||| | |||||||||||| | || Sbjct 159 GGCACCAATGGCACCTCTAATGGACTTGTTCCCATGCTCAGAGTCTTCAACAACACAGCC 100 Query 94141 CGCTACGTGGACCAGGGTGG 94160 || |||||||||||||| || Sbjct 99 CGTTACGTGGACCAGGGAGG 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493158464726880