Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq144817 87.8 1e-12 seq144815 87.8 1e-12 seq144350 87.8 1e-12 >seq144817 Length=321 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 108440 TGGCAGGACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACT 108499 |||| | ||||||| |||| | |||| | || ||| | ||||||||||| || | Sbjct 88 TGGCTGCACAGAACGACATCTTTGAATGGGCGAGGGACCACCGCGTTCACCACAAATATT 147 Query 108500 CTGACACGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGAT 108559 | || ||| |||||||| ||||||||||| || || |||| || || ||||| |||| Sbjct 148 CCGAAACGGACGCCGACCCGCACAACGCCAAGAGAGGTTTCTTCTTTTCACACGTTGGAT 207 Query 108560 GGCTCATGATGACCAAGGACCCCGACGTGAT 108590 || | || ||| || ||||||| ||||| Sbjct 208 GGTTGTTGGTGAAAAAACACCCCGATGTGAT 238 >seq144815 Length=1808 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 108440 TGGCAGGACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACT 108499 |||| | ||||||| |||| | |||| | || ||| | ||||||||||| || | Sbjct 88 TGGCTGCACAGAACGACATCTTTGAATGGGCGAGGGACCACCGCGTTCACCACAAATATT 147 Query 108500 CTGACACGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGAT 108559 | || ||| |||||||| ||||||||||| || || |||| || || ||||| |||| Sbjct 148 CCGAAACGGACGCCGACCCGCACAACGCCAAGAGAGGTTTCTTCTTTTCACACGTTGGAT 207 Query 108560 GGCTCATGATGACCAAGGACCCCGACGTGAT 108590 || | || ||| || ||||||| ||||| Sbjct 208 GGTTGTTGGTGAAAAAACACCCCGATGTGAT 238 >seq144350 Length=1562 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 108440 TGGCAGGACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACT 108499 |||| | ||||||| |||| | |||| | || ||| | ||||||||||| || | Sbjct 1506 TGGCTGCACAGAACGACATCTTTGAATGGGCGAGGGACCACCGCGTTCACCACAAATATT 1447 Query 108500 CTGACACGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGAT 108559 | || ||| |||||||| ||||||||||| || || |||| || || ||||| |||| Sbjct 1446 CCGAAACGGACGCCGACCCGCACAACGCCAAGAGAGGTTTCTTCTTTTCACACGTTGGAT 1387 Query 108560 GGCTCATGATGACCAAGGACCCCGACGTGAT 108590 || | || ||| || ||||||| ||||| Sbjct 1386 GGTTGTTGGTGAAAAAACACCCCGATGTGAT 1356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380595497152032