Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq89999 131 2e-25 seq92029 122 1e-22 seq142104 105 8e-18 seq139941 105 8e-18 seq90861 102 1e-16 seq47423 98.7 1e-15 seq248530 95.1 1e-14 seq40275 93.3 5e-14 seq48637 87.8 2e-12 seq45252 84.2 3e-11 seq44414 84.2 3e-11 >seq89999 Length=590 Score = 131 bits (144), Expect = 2e-25 Identities = 339/510 (66%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 ||||| || || || || |||||||| ||||| || ||| |||||| ||||| | ||| Sbjct 71 TGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCT 130 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||||||||||||||| ||||| || || || ||| | |||||||||||| | Sbjct 131 CGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCC 190 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTT---GTATCAAACCACTTCATC 127708 || || || | |||||||| |||||| | |||| | || | ||| | || Sbjct 191 GCAAATGCCACAAGACGCTCAGCAAAGCTG-----CTTTCACGGTTC-ATCCATTGGATG 244 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| ||||| | || | ||| | || || || || || ||||| || | | Sbjct 245 GCCCAACTAGCCTTCTCACGGACAGCTGGCATCGTGTGAATGGCATCGAAGAGGTCGTCC 304 Query 127769 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACC 127828 || || ||| || |||||||| | || || || || || || || ||||| Sbjct 305 TTCTCCTTTGGGTCCTTGATGTATTGCTCAATCAGCAGCGAGTAGGTCTCAGAGTGGATG 364 Query 127829 ATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 127886 |||| |||||| || | ||||||| | || || || ||||| || || | Sbjct 365 TTTTC--CATGGCAATTTGGAAGCCGTAGAAGGCCCGGGCCTCAGGAATCTGCACTTC-T 421 Query 127887 CGGCAAAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 127945 | |||| || | | | ||||| | || || || ||||| |||||||||| || Sbjct 422 GAGGAAAACTGCTGTGCCAAGTTCTCCAGGACTATGCCGTCGGAGGCAGCAAAAAATGCA 481 Query 127946 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGATCC 128005 || | || ||| | || | ||| || ||||| | ||| || ||| || | | || Sbjct 482 AGCACATGCTTGACAAAGTGCTGCTCGCTCTCGGTAAGGTTCACCCAATCCTTGTTGTCT 541 Query 128006 TTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035 | || || || | ||||| ||||||||| Sbjct 542 TGTGCAAGGTCGATTTCCTCAGCAGTCCAA 571 >seq92029 Length=736 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 ||||| || || || || |||||||| ||||| || ||| |||||| ||||| | ||| Sbjct 335 TGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCT 276 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||||||||||||||| ||||| || || || ||| | |||||||||||| | Sbjct 275 CGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCC 216 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAG 127678 || || || | |||||||| |||||| Sbjct 215 GCAAATGCCACAAGACGCTCAGCAAAG 189 >seq142104 Length=1514 Score = 105 bits (116), Expect = 8e-18 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || |||||||||||||| |||||| ||||| |||||| ||||||||||| ||| Sbjct 670 TGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCATCTTGCCC 729 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 | ||| || | ||||||||| ||| ||| || |||||||||||||| || |||||| Sbjct 730 CTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTCCACAGCA 789 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTT--TGTATCAAACCACTTCATCG 127709 || || |||| || | ||| || | || | ||| || | | ||| |||| | Sbjct 790 GCAAAGGCAACTATCCTCTCACCATA--AGATGCTCTTTCTGGGTTGATCCAATTCAGGG 847 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 127769 ||||||| || ||| | || ||| || | |||| || || | || |||| || | Sbjct 848 CCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTTGCTGTT 907 Query 127770 TTTC 127773 |||| Sbjct 908 TTTC 911 >seq139941 Length=1515 Score = 105 bits (116), Expect = 8e-18 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || |||||||||||||| |||||| ||||| |||||| ||||||||||| ||| Sbjct 845 TGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCATCTTGCCC 786 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 | ||| || | ||||||||| ||| ||| || |||||||||||||| || |||||| Sbjct 785 CTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTCCACAGCA 726 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTT--TGTATCAAACCACTTCATCG 127709 || || |||| || | ||| || | || | ||| || | | ||| |||| | Sbjct 725 GCAAAGGCAACTATCCTCTCACCATA--AGATGCTCTTTCTGGGTTGATCCAATTCAGGG 668 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 127769 ||||||| || ||| | || ||| || | |||| || || | || |||| || | Sbjct 667 CCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTTGCTGTT 608 Query 127770 TTTC 127773 |||| Sbjct 607 TTTC 604 >seq90861 Length=362 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || |||||||| || | ||||| | || ||||||||||| || ||||||||||| ||| Sbjct 253 TGAAGACCCTCATCTCTTGAGATCAACTCGTTCGAGAAGCAAAGCCCTGGCATGAGGCCC 194 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 | ||||||||||||| | || || |||||||| ||| ||||| | |||||||| Sbjct 193 CTCTTCTTCAACCAGTAGATGGCGCAAAATGATCCACTGAAGAGCACTCCCTCCAC 138 >seq47423 Length=281 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || |||||||| | | ||| | ||||| |||||| || || Sbjct 58 AGCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGAAGGTGAGCCC 117 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||||||| | ||||| | ||||||||| | |||||| || || |||||||| Sbjct 118 TGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCGAAAAGAAGAT 177 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 ||||| || || || |||| | | || |||||||| | | || | || Sbjct 178 GCCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCCAAAGGAGGCCGTTTGTGAAGAAAT 237 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGG 127737 ||||| || ||||| | |||||| |||| || ||| || Sbjct 238 CCACTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAGGG 276 >seq248530 Length=247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||||||||| | |||||||||| || | ||| || || |||||| Sbjct 70 TAGATGTTGCTGGTGTATGGCTCAATGGACTCATTGTTGCCAAGGATCTGTGCCGTGGAG 129 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||| |||||||| |||| || | |||||| Sbjct 130 GCTGTTGGCATGGGAGCCAAAAGCAAGCTGTT 161 >seq40275 Length=336 Score = 93.3 bits (102), Expect = 5e-14 Identities = 213/317 (67%), Gaps = 9/317 (3%) Strand=Plus/Minus Query 115660 TGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG 115719 ||||| ||||||||| || | |||||||| || ||||| || | || |||| |||| Sbjct 313 TGGGACTGATCGATGTAGGGCCCCCGATCTGCTGCCATGTCCAGGACGATCTTCTGCTTG 254 Query 115720 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 115779 || ||||| || || | ||||| | ||| || || ||||| | ||||| || || Sbjct 253 ATCTCCCAGACCGTCTTATAGAGTTCCTTCATGTCTTCTGGCAAATCCAAC---TTCTGC 197 Query 115780 ATAGAGCCACCTGCCTTGACCATGAGATCCTTCATA---TCCTTTGACCAGAGACCAATC 115836 | | ||| || | | | || | | || | |||| ||| || || Sbjct 196 ACACTTCCAT-TG--TGGGCGATCAACTGTGTCCGAAGCTCCTCATTCCAAAGGCCCTGG 140 Query 115837 TTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGT 115896 |||| |||| || ||||| ||| || ||||||||| |||| ||| || Sbjct 139 GCAATGAGGTCCTTCAAAAGGTGACGATTCACCTGAACAAACTCTCCCGAGAGCACACGG 80 Query 115897 CTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT 115956 | || ||||| ||| |||||| ||||| ||| |||| ||||| |||| ||| || || Sbjct 79 CGCACATAGAGGTTTTGCGTGTAGGGCTCGAAGGACTCGTTGTTCCCCAGGATCTGTGCG 20 Query 115957 GTGGAGGCTGTGGGCAT 115973 ||||||||||||||||| Sbjct 19 GTGGAGGCTGTGGGCAT 3 >seq48637 Length=361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 204/304 (67%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 |||| |||| || ||||| || || || | || | || || |||| ||| || || Sbjct 50 AAATGCATCGGCCAGACCCTGAACCCCCAAACCCACAGGTCGGTGTCGCATGTTGGAACG 109 Query 116301 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360 ||| || ||||||| | || | |||| || || ||| | || ||||| ||||| || Sbjct 110 TCGGGCTTCCTCCACGAGGTAGTAGTTCCGGTCAATGACCTTGTTCAGATTCTTGGTCAC 169 Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA-GTCTCTTCA---TTGA 116416 ||||| || | || | ||||| | | | ||| | | || ||| |||| ||| Sbjct 170 CACCTTAGTCACCTCGTAGAGCTTCTGGAAGTCATA---GGGACGTC-CTTCGGTGTTGG 225 Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476 | | | || | |||||| || |||| ||| || || | ||| || | | |||| Sbjct 226 CGAAGGTCGGTAAGGCGATGGAAGCCAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGT 285 Query 116477 ACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTG 116536 | || || || ||||| |||| ||| || | | |||||||||||||||| ||||| | Sbjct 286 ATTCGATGATCTCCGTGCACAGATTGGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGG 345 Query 116537 ACTT 116540 |||| Sbjct 346 ACTT 349 >seq45252 Length=640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 182/266 (68%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 |||| || || ||| | || ||||| ||||| || ||||| || | || | ||||| Sbjct 632 TTCCGGTCAATGACCTTGTTCAGATTCTTGGTCACCACCTTAGTCACCTCGTAGAGCTTC 573 Query 116386 TCGTAATCAAAACTGCGA-GTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 116441 | | | ||| | | || ||| |||| ||| | | | || | |||||| || || Sbjct 572 TGGAAGTCATA---GGGACGTC-CTTCGGTGTTGGCGAAGGTCGGTAAGGCGATGGAAGC 517 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 || ||| || || | ||| || | | ||||| || || || ||||| |||| ||| Sbjct 516 CAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGTATTCGATGATCTCCGTGCACAGATT 457 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT-TGTGTTACACGCATCCTTGT 116560 || | | |||||||||||||||| ||||| ||||| | | || | |||||||| Sbjct 456 GGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGGACTTGCGATTGGCATG-ATCCTTGT 398 Query 116561 AGAGCATATATGGCGTCCCCGTCTCC 116586 | ||||| || || || ||||||||| Sbjct 397 ACAGCATGTAAGGAGTGCCCGTCTCC 372 >seq44414 Length=276 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 ||| ||||| || ||||| || || ||||||| ||| | ||| ||| || || ||||| Sbjct 179 ACGGTCAAATCGCCCTGGCCGCAGCAGGGCGTTGTCCAAGATGTCAGAACGATTGGTCGC 120 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 || | || | || || | | | |||||||||||||| ||||||| || ||||| Sbjct 119 TGCCACCACGATGACACCGCTGTTGCCTTCGAAGCCATCCATTTCAGTCAGGATCTGATT 60 Query 12821 GATGGTTTGTTCACGTTCATCATT 12844 || ||| || || || |||||||| Sbjct 59 GAGGGTCTGCTCCCGCTCATCATT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611566768752480