Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq92029 100 5e-16 seq89999 100 5e-16 seq187601 98.7 2e-15 seq187602 95.1 2e-14 >seq92029 Length=736 Score = 100 bits (110), Expect = 5e-16 Identities = 236/354 (67%), Gaps = 13/354 (4%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| | ||| || |||||| || || || || || |||||||||| ||| ||||| | Sbjct 358 ACAGCAAGCAGGCGAAGTCGGCATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAA 299 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | | || || ||||| | || ||| || | ||| ||||| || |||| |||| Sbjct 298 AGGTCAGACCAGGCATCAAACCTCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGC 239 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 | || | |||||||||||| |||||||| ||||| || | |||| |||| | || Sbjct 238 TGAATAGGATCCCCTCCACTGCCGCAAATGCCACAAGACGCTCAGCAAA------GCTGC 185 Query 160095 TGTCATGGGTCCACCTTT---TGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT 160151 | ||| || || || || ||||||| |||||||| || ||||| | Sbjct 184 TTTCACGGTTCATCCATTGGATGGCCCAACTAGCCTTCTCACGGACAGCTGGCATCGTGT 125 Query 160152 CGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAG--CAATCAG 160209 | ||| | || | ||||| |||||| |||||||| | | | ||||||| Sbjct 124 GAATGGCATCGAAGAGGTCGTCCTTCTCCTTTGGGTCCTTGAT--GTATTGCTCAATCAG 67 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAA 160263 | |||||| | || | ||| | ||||| ||||| || || ||| |||||| Sbjct 66 CAGCGAGTAGGTCTCAGAGTGGATGTTTTCCATGGCAATTTGGAAGCCGTAGAA 13 >seq89999 Length=590 Score = 100 bits (110), Expect = 5e-16 Identities = 236/354 (67%), Gaps = 13/354 (4%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| | ||| || |||||| || || || || || |||||||||| ||| ||||| | Sbjct 48 ACAGCAAGCAGGCGAAGTCGGCATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAA 107 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | | || || ||||| | || ||| || | ||| ||||| || |||| |||| Sbjct 108 AGGTCAGACCAGGCATCAAACCTCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGC 167 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 | || | |||||||||||| |||||||| ||||| || | |||| |||| | || Sbjct 168 TGAATAGGATCCCCTCCACTGCCGCAAATGCCACAAGACGCTCAGCAAA------GCTGC 221 Query 160095 TGTCATGGGTCCACCTTT---TGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT 160151 | ||| || || || || ||||||| |||||||| || ||||| | Sbjct 222 TTTCACGGTTCATCCATTGGATGGCCCAACTAGCCTTCTCACGGACAGCTGGCATCGTGT 281 Query 160152 CGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAG--CAATCAG 160209 | ||| | || | ||||| |||||| |||||||| | | | ||||||| Sbjct 282 GAATGGCATCGAAGAGGTCGTCCTTCTCCTTTGGGTCCTTGAT--GTATTGCTCAATCAG 339 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAA 160263 | |||||| | || | ||| | ||||| ||||| || || ||| |||||| Sbjct 340 CAGCGAGTAGGTCTCAGAGTGGATGTTTTCCATGGCAATTTGGAAGCCGTAGAA 393 >seq187601 Length=2838 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| ||||| || || ||||| || || | ||||| | | | ||| || ||||| Sbjct 635 TCTTGGTCCACTGTAAATTGAATTGCATTTGCAGCAGGACGAGTACGCAGGTAATACATT 694 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || ||||| | ||| ||||| | ||||||| | |||||||| ||| Sbjct 695 CCTGTCTTGAGACCCTTTTTCCAGCCGTAGAAGTGCATGCTTGTCAGTTTGCCATAGTTA 754 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || | || | | | || | ||||||||||||||| ||||| | | | || || Sbjct 755 GGTGCAGCAAAGAACACATTGAAAGACTGGCTTTGGTCAATGAATGCTCCTCTGTCAGCA 814 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||||| | || | ||| |||| ||||| ||||| || |||||| ||| Sbjct 815 GCCATGTCTATGAGAGTCCTCTGGGAAATTTCCCAAACTGTCTTGTACA 863 >seq187602 Length=2693 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| ||||| || || ||||| || || | ||||| | | | || || ||||| Sbjct 2051 TCTTGGTCCACTGTAAATTGAATTGCATTTGCAGCAGGACGAGTACGCAAGTAATACATT 1992 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || ||||| | ||| ||||| | ||||||| | ||| |||| ||| Sbjct 1991 CCTGTCTTGAGACCCTTTTTCCAGCCGTAGAAGTGCATGCTTGTCAGCTTGCCATAGTTA 1932 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || || | | | || | ||||||||||||||| ||||| | | | || || Sbjct 1931 GGTTCAGCAAAGAACACATTGAAAGACTGGCTTTGGTCAATGAATGCTCCTCTGTCAGCA 1872 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||||| | || | ||| |||| ||||| ||||| || |||||| ||| Sbjct 1871 GCCATGTCTATGAGAGTCCTCTGGGAAATTTCCCAAACTGTCTTGTACA 1823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792640243375680