Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq139941 98.7 1e-15 seq142104 96.9 4e-15 seq242622 87.8 2e-12 seq92029 86.0 7e-12 seq89999 86.0 7e-12 seq248530 82.4 9e-11 >seq139941 Length=1515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 356/553 (64%), Gaps = 7/553 (1%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || || || ||| |||||||||||| |||| || || Sbjct 858 GGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACC 799 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| || || || |||||||| || |||||| |||| ||||| |||||||| Sbjct 798 TGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGAT 739 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT----GTCGA 119670 || |||||| || || || | || | |||| || ||| | | || || || Sbjct 738 TCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGAT-GCTCTTTCTGGGTTGA 680 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| || || ||||| | ||| || ||| | || || | || | ||||| | || Sbjct 679 TCCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGA 620 Query 119731 AAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCT 119790 ||||||||| |||||||| |||| ||| || | ||||| | | ||| | | Sbjct 619 AAAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTT 560 Query 119791 CACCATGAACCATTTC-ATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATT 119849 || || | | || |||| | || || |||| || | | || || | || | Sbjct 559 CAGAGTGGATATTCTCTATTG-CTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACT 501 Query 119850 TGCACTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCG 119909 || ||||| | |||| | | || ||| ||||| |||||| ||||| Sbjct 500 TGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCG 441 Query 119910 AAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCG 119969 ||||| || | | || ||| ||||| | | ||||| ||| ||| | |||||| Sbjct 440 AAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCA 381 Query 119970 TCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTA 120029 || ||||||| || | || || || || ||||||||| || | |||||||| Sbjct 380 TCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTG 321 Query 120030 TAGAGTTCCCAAA 120042 || | || ||||| Sbjct 320 TACATTTGCCAAA 308 >seq142104 Length=1514 Score = 96.9 bits (106), Expect = 4e-15 Identities = 379/589 (64%), Gaps = 9/589 (2%) Strand=Plus/Plus Query 119460 GATGGTTTGTTTCTCAAGAGTTTAAACAACTCTAC-GGCAAATTCTTGATGAAGCCCTTC 119518 ||||||||||| |||| | |||| | ||| |||||| || |||||| || || Sbjct 622 GATGGTTTGTTGACCAAGTATGAGAACATC-ATACAGGCAAAGTCACAATGAAGACCCTC 680 Query 119519 ATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAG 119578 || ||| |||||||||||| |||| || || ||||| || || || ||||| Sbjct 681 GTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCATCTTGCCCCTCTTTTTTAG 740 Query 119579 CCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAA 119638 ||| || |||||| |||| ||||| |||||||| || |||||| || || || | Sbjct 741 CCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTCCACAGCAGCAAAGGCAAC 800 Query 119639 TAGACGCTCAGCAAAAGGTCGAGACTT----GTCGAACCACTTGAGAGCCCAGTTGGCCT 119694 || | |||| || ||| | | || || || ||| || || ||||| | || | Sbjct 801 TATCCTCTCACCATAAGAT-GCTCTTTCTGGGTTGATCCAATTCAGGGCCCACTGAGCTT 859 Query 119695 TACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCACCAT 119754 | ||| | || || | || | ||||| | ||||||||||| |||||||| | Sbjct 860 TTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTTGCTGTTTTTCAGCCGAGT 919 Query 119755 CCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTC-ATTGTGT 119813 ||| ||| || | ||||| | | ||| | ||| || | | || |||| | Sbjct 920 CCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAGAGTGGATATTCTCTATTG-CT 978 Query 119814 GACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATTGTTG 119873 || || |||| || | | || || | || ||| ||||| | |||| | Sbjct 979 ATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGACTTCCTGGCTAAAACACTCA 1038 Query 119874 TTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTTTATG 119933 | || ||| ||||| |||||| |||||||||| || | | || ||| ||| Sbjct 1039 ACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAACGTGCTTGATG 1098 Query 119934 AATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGTCCACC 119993 || | | ||||| ||| ||| | |||||| || ||||||| || | || || Sbjct 1099 AAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCTTTATCTTTGGAAAGATCGACT 1158 Query 119994 TCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAA 120042 || || ||||||||| || | |||||||| || | || ||||| Sbjct 1159 TCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACATTTGCCAAA 1207 >seq242622 Length=209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 109699 TCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 |||| |||||| ||||||| ||||||||||| | | | |||| ||| | | Sbjct 174 TCAA-AAGATGACGGTTGACCTGCACAAATTCACCGGACAAAACCCTGCGGACGTACAAG 116 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || |||||||||||||||| |||| ||||| || | ||| ||||||||| || ||| Sbjct 115 TTCTGCGTGTAGGGTTCGAAAGACTCGTTGTTTCCCAAGATCTGTGCAGTGCTGGCGGTG 56 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||||| ||||||| || | ||||| || || || Sbjct 55 GGCATCGGAGCCACCAGCAAGCTGTTGCGAAGTCC 21 >seq92029 Length=736 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||| || |||||||| ||||||||||||||||| ||| || |||||||| | || Sbjct 336 ATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACC 277 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || ||||| | ||| || || ||||| ||| ||| || | ||| |||||||| Sbjct 276 TCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGC 217 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAA 119653 || || || | |||||||||||||| Sbjct 216 CGCAAATGCCACAAGACGCTCAGCAAA 190 >seq89999 Length=590 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||| || |||||||| ||||||||||||||||| ||| || |||||||| | || Sbjct 70 ATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACC 129 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || ||||| | ||| || || ||||| ||| ||| || | ||| |||||||| Sbjct 130 TCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGC 189 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAA 119653 || || || | |||||||||||||| Sbjct 190 CGCAAATGCCACAAGACGCTCAGCAAA 216 >seq248530 Length=247 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || || | ||||||||||||| ||||| ||||| ||||| Sbjct 69 GTAGATGTTGCTGGTGTATGGCTCAATGGACTCATTGTTGCCAAGGATCTGTGCCGTGGA 128 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||| ||||||||||||| || | ||||| Sbjct 129 GGCTGTTGGCATGGGAGCCAAAAGCAAGCTGTT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587113157258400