Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq75038 309 3e-79 seq174639 306 4e-78 seq12672 280 2e-70 seq25705 194 2e-44 seq75039 185 1e-41 seq25321 158 1e-33 seq174640 152 6e-32 seq251946 140 4e-28 seq23841 116 4e-21 seq174642 86.0 7e-12 >seq75038 Length=481 Score = 309 bits (342), Expect = 3e-79 Identities = 357/481 (74%), Gaps = 0/481 (0%) Strand=Plus/Minus Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 || |||| ||||| || ||||| ||| || || || | ||||| || || |||| || Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | ||||| || | || || | |||||||| || || |||| |||||| | |||| Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | |||||||| ||||| | ||| | || |||||||| ||||| |||||| | ||||||| Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | || |||||| | || || ||||| || |||||||| || ||| ||||||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | ||||||||||| || | || | || || ||||||| ||||| ||| | Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 |||| | ||||||||||||||||||||||| ||||| ||||| || |||||||| || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 ||||||| || |||||||| ||||| ||||| ||||| ||||| || || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 || |||||||| || || || |||||||| | | || | || || |||||||| | Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTA 2 Query 168701 A 168701 | Sbjct 1 A 1 >seq174639 Length=919 Score = 306 bits (338), Expect = 4e-78 Identities = 492/701 (70%), Gaps = 6/701 (1%) Strand=Plus/Plus Query 167986 GTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATC 168045 || || || || || || | ||||| || ||||| ||||| | ||||| || ||||| Sbjct 201 GTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATT 260 Query 168046 ATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGG 168105 || | || || || | || ||||||||||||||| |||| |||||||| | ||| Sbjct 261 ATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGG 320 Query 168106 GAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTT 168165 || || | | |||||||| || ||||| |||||| | | ||| | ||||| || Sbjct 321 GAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTT 380 Query 168166 CACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCA-TATC-GTT 168223 || || | | ||| | | | ||||| | ||||||||| |||| | || | | Sbjct 381 CATTTTATGCTTGGTGTTGCTTGTTGGATGGGTAGAGAATGGGAA--TTCAGTTTCAGAT 438 Query 168224 TAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAG 168283 |||||||| | |||||||| | ||| || | ||| ||||| || | ||||| ||||| Sbjct 439 TAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAG 498 Query 168284 TATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCT 168343 |||| | || ||||| | ||||||| ||| || || |||| |||||| | ||||| Sbjct 499 TATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAA 558 Query 168344 CAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCT 168403 ||||| || || | ||| | || |||||||| || || || ||| | |||||||| | Sbjct 559 GTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCAT 618 Query 168404 TCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAA 168463 ||||||| || || || ||||| |||||||| || || |||||||| ||||| || Sbjct 619 TCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTT 678 Query 168464 GTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAA-ACCGAATCCCAAAACTACGGT 168522 || ||||| ||||| || || ||| || | | | | | || ||| | || Sbjct 679 CATTAGTTACATCTTCACTTCTTGCAGAAACTGCAGGAGATATTAGCCTAAATGTT-GGA 737 Query 168523 TACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGT 168582 || ||||| || |||||||| ||||| || | ||| ||| || |||||||| || ||| Sbjct 738 TATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGT 797 Query 168583 CGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCT 168642 | | || || ||||| ||||| ||||| ||||| || | ||||||||||| || Sbjct 798 AGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCA 857 Query 168643 GCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGT 168683 || ||||| ||| | || || |||||||| || ||||| || Sbjct 858 GCTTGGCCAGTTATTGGGATTTGGTTCACAGCACTTGGAGT 898 >seq12672 Length=424 Score = 280 bits (310), Expect = 2e-70 Identities = 316/423 (75%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 168279 TGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGG 168338 ||| ||||| || | || || | |||||||| || || |||| |||||| | || Sbjct 2 TGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGG 61 Query 168339 AATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCA 168398 ||| |||||||| ||||| | ||| | || |||||||| ||||| |||||| | ||||| Sbjct 62 AATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCA 121 Query 168399 TCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCA 168458 ||| || |||||| | || || ||||| || |||||||| || ||| ||||||||| Sbjct 122 TCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCA 181 Query 168459 CGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTA 168518 || ||||||||||| || | || | || || ||||||| ||||| ||| Sbjct 182 TGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGC 241 Query 168519 CGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTT 168578 ||||| | ||||||||||||||||||||||| ||||| ||||| || |||||||| || Sbjct 242 TGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTT 301 Query 168579 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 168638 |||||||| || |||||||| ||||| ||||| ||||| ||||| || || |||||| | Sbjct 302 TGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTT 361 Query 168639 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 168698 ||| |||||||| || || || |||||||| | | || | || || |||||||| Sbjct 362 AGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATT 421 Query 168699 CAA 168701 || Sbjct 422 TAA 424 >seq25705 Length=358 Score = 194 bits (214), Expect = 2e-44 Identities = 217/290 (75%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 169649 CAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGT 169708 ||||||||| | ||||| || || || | ||||||||||| |||||||||| || Sbjct 296 CAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTCTCAGGA 237 Query 169709 CCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTC 169768 || || || || | | |||||| || || || |||||||| || || |||||| Sbjct 236 CCAATAGCAGTTTATACATCTGTCTTCCTAATTTATCCACTTGGTCAATCTAGCTGGTTC 177 Query 169769 TTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTC 169828 ||||| || |||||| || | || |||||| | ||||| || ||||| ||||| || Sbjct 176 TTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTCAAGGTTTT 117 Query 169829 CACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCA 169888 || || ||||| || ||||| || ||||||||||||||||| ||||| ||||| || ||| Sbjct 116 CATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGGGAGGTGCA 57 Query 169889 TTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGA 169938 || || || ||||||||||||| ||| || | ||||| | ||| |||| Sbjct 56 TTACTATCAGCTATCCATGGTGCTACTGTCGTTAACACTATTTATCAAGA 7 >seq75039 Length=421 Score = 185 bits (204), Expect = 1e-41 Identities = 255/354 (72%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| | ||| | |||||||| || || |||||||||||| | || |||| || Sbjct 354 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTACC 295 Query 167950 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 168008 ||||| || || | || || || ||||| || || || || || || || || ||||| Sbjct 294 -TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTGA 236 Query 168009 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTC 168068 ||| || |||||||| | | ||||| ||||| || || | || || || | ||| | Sbjct 235 ACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTAC 176 Query 168069 TTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTG 168128 ||| || || ||||| | || || ||||| || |||||||| || || | ||||| || Sbjct 175 TTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATG 116 Query 168129 GTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGC 168188 | | ||||| ||||| |||| ||| || | || | ||||| || | || || | | Sbjct 115 GCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTG 56 Query 168189 ATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGAT 168242 || ||||||||||||||||||||||| | |||| |||| ||||| || ||||| Sbjct 55 CTATATGGGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 158 bits (174), Expect = 1e-33 Identities = 231/324 (71%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| | ||| | |||||||| || || |||||||||||| | || |||| || Sbjct 156 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTACC 215 Query 167950 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 168008 ||||| || || | || || || ||||| || || || || || || || || ||||| Sbjct 216 -TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTTGATATTGATGGAATTCGTGA 274 Query 168009 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTC 168068 ||| || |||||||| | | ||||| ||||| || || | || || || | ||| | Sbjct 275 ACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTAC 334 Query 168069 TTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTG 168128 ||| || || ||||| | || || ||||| || |||||||| || || | ||||| || Sbjct 335 TTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATG 394 Query 168129 GTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGC 168188 | | ||||| ||||| |||| ||| || | || | ||||| || | || || | | Sbjct 395 GCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTG 454 Query 168189 ATACATGGGACGTGAATGGGAACT 168212 || |||||||||||||||||||| Sbjct 455 CTATATGGGACGTGAATGGGAACT 478 >seq174640 Length=289 Score = 152 bits (168), Expect = 6e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 || || ||||| || |||||||| ||||| || | ||| ||| || |||||||| || Sbjct 255 GGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTT 196 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 ||| | | || || ||||| ||||| ||||| ||||| || | ||||||||||| Sbjct 195 GGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTA 136 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 || || ||||| ||| | || || |||||||| || ||||| || || ||||| ||| Sbjct 135 GCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTTC 76 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 168738 ||| | || ||||| ||||||||||| |||||||| ||| Sbjct 75 AACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq251946 Length=233 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 168086 TTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTC 168145 ||||||| ||||| || |||||||| ||||| | ||||| ||||| ||||| ||||| | Sbjct 230 TTCACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCC 171 Query 168146 CTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAAT 168205 ||| || | | || | || || | | || ||| | || || || ||||| | Sbjct 170 CTTATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGT 111 Query 168206 GGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAG 168265 ||||||| |||||||||||||||||||||||||||| |||||| | | | ||||| | Sbjct 110 GGGAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTG 51 Query 168266 TCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGT 168315 | || ||||| ||||| || || || ||||| | |||||||| ||| Sbjct 50 TAGCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGGAAGT 1 >seq23841 Length=230 Score = 116 bits (128), Expect = 4e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 169984 AGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGC 170043 |||||| |||||||| ||||| || || || || || ||||| ||| | || ||| | || Sbjct 33 AGAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTATTTGGTGTAGC 92 Query 170044 GTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTG 170103 || || |||||| | ||||||||||| |||||| | ||||| ||| | ||| | || Sbjct 93 CTTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAGCAGGTATGTG 152 Query 170104 GACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTT 170157 |||||| || ||||| || ||||| | || | ||||| | ||||| ||||| Sbjct 153 GACATCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATGATTT 206 >seq174642 Length=303 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 167986 GTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATC 168045 || || || || || || | ||||| || ||||| ||||| | ||||| || ||||| Sbjct 208 GTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATT 149 Query 168046 ATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGG 168105 || | || || || | || ||||||||||||||| |||| |||||||| | ||| Sbjct 148 ATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGG 89 Query 168106 GAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTT 168165 || || | | |||||||| || ||||| |||||| | | ||| | ||||| || Sbjct 88 GAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTT 29 Query 168166 CACTT 168170 || || Sbjct 28 CATTT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572656626174240