Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq174639 374 1e-98 seq75038 306 4e-78 seq12672 277 2e-69 seq174641 215 6e-51 seq75039 215 6e-51 seq25321 203 4e-47 seq174640 140 4e-28 seq251946 125 8e-24 seq174642 109 6e-19 >seq174639 Length=919 Score = 374 bits (414), Expect = 1e-98 Identities = 525/733 (72%), Gaps = 4/733 (1%) Strand=Plus/Plus Query 168593 GCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCT 168652 || |||||| |||||| | || ||||| || ||||| |||||||| ||||| || | Sbjct 180 GCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCA 239 Query 168653 CTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 168712 || | ||||| || ||||| || |||| || || | ||| ||| || || || || Sbjct 240 CTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGG 299 Query 168713 CTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGT 168772 | || ||||| ||| ||||||| || | | | |||||||| ||||||||||||||| Sbjct 300 GTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGT 359 Query 168773 CCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAG 168832 | || || || ||| | | || || | | || | || | ||||||||| | Sbjct 360 ACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGTTGCTTGTTGGATGGGTAGAGAA 419 Query 168833 TGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCA 168892 |||||||| | |||| ||||||||||||| ||||| | ||| |||| |||||||| Sbjct 420 TGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCT 479 Query 168893 GTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGAT 168952 || ||||| ||||||||||| |||| || ||| ||||||| | | || || ||| Sbjct 480 GTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGAT 539 Query 168953 GGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCAC 169012 || |||||| ||||||| |||||| || || || ||| | || ||||||||||| || Sbjct 540 GGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACAT 599 Query 169013 AACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTA 169072 |||||| | |||||||| |||||||| ||||||||| ||| | || || || || || Sbjct 600 AACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTA 659 Query 169073 TTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGA- 169131 || ||||||||||||||| | || |||||||| || | ||| ||| | |||| Sbjct 660 TTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACTGC--AGGAG 717 Query 169132 AGAATCTCAGAACT-ATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTG 169190 | | | | || | ||| || ||||| ||||||||||| ||||| |||| || | Sbjct 718 ATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAG 777 Query 169191 CAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAA 169250 |||| ||||| || || |||||| | || || || ||||| ||||| ||||| | | Sbjct 778 CAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTA 837 Query 169251 GTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTA 169310 ||||||||||||||||||||| | |||||| | | | ||||| || | | || Sbjct 838 GTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGATTTGGTTCACAGCACTTGGAG 897 Query 169311 TCTGTACAATGGC 169323 | |||||||||| Sbjct 898 TAAGTACAATGGC 910 >seq75038 Length=481 Score = 306 bits (338), Expect = 4e-78 Identities = 355/479 (74%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 ||||| ||| | |||||||| ||| |||||||||| ||||| | || || ||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 ||||| | | |||||| ||||||| || || || || ||||| |||||| |||||||| Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 || ||||| ||||| || ||| | || |||||||||||||| || ||| | |||||||| Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || |||||| ||| ||||| ||| |||| ||||| || |||| || || ||||||||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 ||| | || || || || |||| | || || ||||| | ||||| || |||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 || | ||||| |||||||||||||| ||||| ||||| ||||||||||| || || ||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 | ||||| ||||| ||||| |||||| |||||| | | | || |||||| |||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || || | | ||||| || ||| | || || | ||||||||||| || Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 277 bits (306), Expect = 2e-69 Identities = 315/423 (74%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 ||| ||||| | | |||||| ||||||| || || || || ||||| |||||| |||| Sbjct 2 TGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGG 61 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 |||||| ||||| ||||| || ||| | || |||||||||||||| || ||| | ||||| Sbjct 62 AATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCA 121 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCA 169086 ||| || |||||| ||| ||||| ||| |||| ||||| || |||| || || ||||| Sbjct 122 TCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCA 181 Query 169087 TGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTA 169146 ||||||| | || || || || |||| | || || ||||| | ||||| || Sbjct 182 TGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGC 241 Query 169147 TGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 |||||| | ||||| |||||||||||||| ||||| ||||| ||||||||||| || || Sbjct 242 TGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTT 301 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 169266 ||| | ||||| ||||| ||||| |||||| |||||| | | | || |||||| | Sbjct 302 TGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTT 361 Query 169267 AGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 169326 ||| | | || || || | | ||||| || ||| | || || | ||||||||||| Sbjct 362 AGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATT 421 Query 169327 CAA 169329 || Sbjct 422 TAA 424 >seq174641 Length=312 Score = 215 bits (238), Expect = 6e-51 Identities = 221/289 (76%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 168822 TGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTT 168881 |||||||| | |||||||| | |||| ||||||||||||| ||||| | ||| |||| Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 168882 ATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTT 168941 |||||||| || ||||| ||||||||||| |||| || ||| ||||||| | | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 168942 CTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCC 169001 || || ||||| |||||| ||||||| |||||| || || || ||| | || |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 169002 AAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCG 169061 ||||||| || |||||| | |||||||| |||||||| ||||||||| ||| | || | Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 169062 GTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCT 169110 | || || |||| ||||||||||||||| | || |||||||| || Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq75039 Length=421 Score = 215 bits (238), Expect = 6e-51 Identities = 278/381 (73%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 || || |||||| | || || || | ||| || | ||| |||||||||| || || | Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| ||| |||||||||||| | | ||| || ||| |||| ||| |||||||||| Sbjct 321 ATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGTTGCTGCACC 263 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || ||||| | |||||||| | ||| | || | ||||||||||| Sbjct 262 TCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 203 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || |||| || || |||| ||||||||||||| ||| |||| || || ||||| Sbjct 202 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 143 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| ||| | | ||||| ||| ||||||||||||| ||||| || || | | Sbjct 142 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 83 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| | | ||||| | | ||| ||||| | | |||||| | || | | Sbjct 82 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACTTTCGTTTCG 23 Query 168850 ACTAGGTATGAGACCTTGGAT 168870 ||||| ||| | |||||||| Sbjct 22 TCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 203 bits (224), Expect = 4e-47 Identities = 256/349 (73%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 || || |||||| | || || || | ||| || | ||| |||||||||| || || | Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| ||| |||||||||||| | | ||| || ||| |||| ||| |||||||||| Sbjct 189 ATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGTTGCTGCACC 247 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || ||||| | |||||||| | ||| | || | ||||||||||| Sbjct 248 TCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 307 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || |||| || || |||| ||||||||||||| ||| |||| || || ||||| Sbjct 308 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 367 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| ||| | | ||||| ||| ||||||||||||| ||||| || || | | Sbjct 368 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 427 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 168838 | |||||| | | ||||| | | ||| ||||| | | |||||| Sbjct 428 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAA 476 >seq174640 Length=289 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 169147 TGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 ||| || ||||| ||||||||||| ||||| |||| || ||||| ||||| || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 169266 |||||| | || || || ||||| ||||| ||||| | ||||||||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 169267 AGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 169326 ||||| | |||||| | || | ||||| || | | || | |||||||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 169327 CAACTTGAACGGATTTAACTTTAACCAATC 169356 |||||| || || || ||||| |||||||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATC 47 >seq251946 Length=233 Score = 125 bits (138), Expect = 8e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 168716 CACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCT 168775 ||||| || |||||||||||||| || | | ||||| ||||||||||||||||| ||| Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 168776 TACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGG 168835 || | ||| | | | || || || | || ||| | || || ||| | ||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 168836 GAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTA 168895 ||| || || | |||||||| | || ||||||| |||||||| | ||||| ||| Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 168896 TCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGG 168939 | |||||| ||||| || |||||||| ||| ||||||| || Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 >seq174642 Length=303 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 168593 GCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCT 168652 || |||||| |||||| | || ||||| || ||||| |||||||| ||||| || | Sbjct 229 GCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCA 170 Query 168653 CTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 168712 || | ||||| || ||||| || |||| || || | ||| ||| || || || || Sbjct 169 CTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGG 110 Query 168713 CTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGT 168772 | || ||||| ||| ||||||| || | | | |||||||| ||||||||||||||| Sbjct 109 GTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGT 50 Query 168773 CCTTACCAGTTGGTA 168787 | || || || ||| Sbjct 49 ACATATCAATTTGTA 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562656355885440