Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq174639 298 6e-76 seq75038 251 8e-62 seq12672 226 3e-54 seq25705 187 3e-42 seq174641 156 5e-33 seq251946 129 7e-25 seq23841 127 2e-24 seq174642 89.7 6e-13 >seq174639 Length=919 Score = 298 bits (330), Expect = 6e-76 Identities = 484/695 (70%), Gaps = 6/695 (1%) Strand=Plus/Plus Query 167201 TGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGG 167260 ||| ||| | || || || ||||| || | |||||||| ||||| ||||| | ||||| Sbjct 191 TGCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGG 250 Query 167261 TAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTA 167320 || ||||| || | || || || | || ||||||||||||||| |||| ||||| Sbjct 251 CAATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTA 310 Query 167321 TCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACT 167380 ||| | ||||| || | || ||||| || || ||||||||| | | ||| | Sbjct 311 TCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATT 370 Query 167381 CGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTAT---ATGGGTCGTGAGTGGGAACT 167437 ||||| | || || || |||| | ||| | | |||||| | || |||||| | Sbjct 371 TGTAGTACTTCATTTTATGCTTGGTGT---TGCTTGTTGGATGGGTAGAGAATGGGAATT 427 Query 167438 CTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGC 167497 | || | | | |||||| | || ||||| | ||| || | ||| || || || | || Sbjct 428 CAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGC 487 Query 167498 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCC 167557 ||| | ||| ||||| | || ||||| | ||||||| | || || || | ||||| Sbjct 488 AGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCC 547 Query 167558 TCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 167617 | | || || ||| || || || | |||||||| ||||||||||| || ||||| | Sbjct 548 TTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTTT 607 Query 167618 GATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGC 167677 ||||| || |||||||| || || || ||||| ||||| || ||||| | || ||||| Sbjct 608 AATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGC 667 Query 167678 AATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCA 167737 |||||| ||||| | ||||| ||||| || || ||||| | | | | || Sbjct 668 AATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACTGCAGGAGATATTAGCCT 727 Query 167738 GAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGG 167797 || ||| || ||||| ||||| ||||| || || |||| ||| || || ||||| Sbjct 728 AAATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGG 787 Query 167798 TTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTT 167857 ||| || ||| | || || || ||||| || |||||||| ||||| || || ||||| Sbjct 788 TTATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTT 847 Query 167858 CTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGT 167892 |||| | ||||| ||||| ||| |||| || |||| Sbjct 848 CTTCCTAGCAGCTTGGCCAGTTATTGGGATTTGGT 882 >seq75038 Length=481 Score = 251 bits (278), Expect = 8e-62 Identities = 324/447 (72%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 |||| || ||||| || ||||| ||| || || || | |||||| || || || ||| Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 | ||||| | | || || | |||||||| || || || || | |||||| | || | Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 | || || || ||||| | ||| |||| |||||||||||||| || || | ||||| | Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | || |||||| | || || ||||| || || || ||||| | || ||| ||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745 |||| ||||||| || || | |||||||||| || |||| ||| || || || Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805 |||| | ||||| || |||||||| || |||||||| || || || |||||||| || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865 |||| | || |||||||| || || ||||| ||||| ||||| | || |||||||| | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGT 167892 | |||||||| ||||| || |||| Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGT 35 >seq12672 Length=424 Score = 226 bits (250), Expect = 3e-54 Identities = 284/390 (73%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 167503 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTG 167562 |||| ||||| | | || || | |||||||| || || || || | |||||| | | Sbjct 1 CTGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAG 60 Query 167563 GTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 167622 | || || || || ||||| | ||| |||| |||||||||||||| || || | |||| Sbjct 61 GAATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGC 120 Query 167623 ACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGC 167682 | || || |||||| | || || ||||| || || || ||||| | || ||| |||| Sbjct 121 ATCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGC 180 Query 167683 ACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACT 167742 | ||||| ||||||| || || | |||||||||| || |||| ||| || || Sbjct 181 ATGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATG 240 Query 167743 ATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACT 167802 |||||| | ||||| || |||||||| || |||||||| || || || |||||||| | Sbjct 241 CTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATT 300 Query 167803 TCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCT 167862 | ||||| | || |||||||| || || ||||| ||||| ||||| | || ||||||| Sbjct 301 TTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCT 360 Query 167863 TGGCAGCATGGCCTGTTGTTGGTATCTGGT 167892 | || |||||||| ||||| || |||| Sbjct 361 TAGCTATTTGGCCTGTAGTTGGAATTTGGT 390 >seq25705 Length=358 Score = 187 bits (206), Expect = 3e-42 Identities = 220/298 (74%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 168819 CTTCGTCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTC 168878 || |||||||||||| | ||||| || | || | || || ||||| |||| ||| Sbjct 302 CTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTC 243 Query 168879 TCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGT 168938 || || || || || |||| | ||||| || || || || || |||||||| || Sbjct 242 TCAGGACCAATAGCAGTTTATACATCTGTCTTCCTAATTTATCCACTTGGTCAATCTAGC 183 Query 168939 TGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAA 168998 ||||| || || ||| || ||||| | || |||||||||||||| | ||||| ||| Sbjct 182 TGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTCAA 123 Query 168999 GGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGA 169058 || || ||||| |||||| | ||||| ||||| |||||||||||||| || || |||||| Sbjct 122 GGTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGGGA 63 Query 169059 GGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATG 169116 || || || || || || || ||||||| ||| || | || ||| | |||||||||| Sbjct 62 GGTGCATTACTATCAGCTATCCATGGTGCTACTGTCGTTAACACTATTTATCAAGATG 5 >seq174641 Length=312 Score = 156 bits (172), Expect = 5e-33 Identities = 208/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 167419 TGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCAT 167478 ||||| | || |||||| || || | | | |||||| | || ||||| | ||| || | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 167479 ACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTT 167538 ||| || || || | ||||| | ||| ||||| | || ||||| | ||||||| | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 167539 CTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCC 167598 || || || | |||||| | || || ||| || || || | |||||||| |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 167599 AAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCG 167658 ||||||| || ||||| | ||||| || |||||||| || || || ||||| ||||| | Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 167659 GCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCT 167707 | ||||| | || ||||||||||| ||||| | ||||| ||||| || Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq251946 Length=233 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 167308 GTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTG 167367 || ||||||| ||||| || |||||||| ||| | | || || ||||| || ||||||| Sbjct 233 GTATTCACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTG 174 Query 167368 GTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTG 167427 | |||| || | | || | || || | | || ||| | ||||| ||||||| Sbjct 173 GCCCTTATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTG 114 Query 167428 AGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTC 167487 |||||||||| ||| ||| | ||||||||||| ||||||| |||||| | | | || | Sbjct 113 AGTGGGAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCAC 54 Query 167488 CAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGG 167536 | || || |||||| | || || || || || ||||| | |||||||| Sbjct 53 CTGTAGCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 >seq23841 Length=230 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 169160 AGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGC 169219 ||| || || |||||||||||||| || || ||||| ||||||||| | |||||| | || Sbjct 33 AGAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTATTTGGTGTAGC 92 Query 169220 GTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTG 169279 ||| || ||||| ||| | |||||||| ||||| ||||| ||| | ||| | || Sbjct 93 CTTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAGCAGGTATGTG 152 Query 169280 GACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTC 169339 |||| ||| || ||||| ||||| | || | || || | |||||||| ||| |||| Sbjct 153 GACATCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATGATTTTATTTC 212 Query 169340 CCAAGAGATCAGAGCAGC 169357 ||||| | | |||||| Sbjct 213 TCAAGAATTGAAAGCAGC 230 >seq174642 Length=303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 167201 TGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGG 167260 ||| ||| | || || || ||||| || | |||||||| ||||| ||||| | ||||| Sbjct 218 TGCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGG 159 Query 167261 TAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTA 167320 || ||||| || | || || || | || ||||||||||||||| |||| ||||| Sbjct 158 CAATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTA 99 Query 167321 TCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACT 167380 ||| | ||||| || | || ||||| || || ||||||||| | | ||| | Sbjct 98 TCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATT 39 Query 167381 CGTAGTTTTCCACTTCCTGATTGG 167404 ||||| | || || || |||| Sbjct 38 TGTAGTACTTCATTTTATGCTTGG 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558834880987200