Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq174639 340 3e-88 seq75038 271 1e-67 seq12672 253 3e-62 seq174641 203 5e-47 seq75039 188 1e-42 seq25321 176 7e-39 seq174640 145 1e-29 >seq174639 Length=919 Score = 340 bits (376), Expect = 3e-88 Identities = 549/785 (70%), Gaps = 16/785 (2%) Strand=Plus/Plus Query 215321 AATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGC---AGCT 215377 |||||| ||||| |||| || |||||| |||| ||| | ||| || | | ||| Sbjct 105 AATCGTCTCTACATTGGGTGCTTTGGTATCCTAATGTTCCCT---CTTTTAACTTTAGCA 161 Query 215378 ACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGA 215437 || | | || ||| ||| || || ||||||| | || ||||| || ||||| ||| Sbjct 162 ACTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGA 221 Query 215438 GAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCT 215497 || ||||| ||||| || | | ||||| || ||||| || | || ||||| |||| Sbjct 222 GAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCA 281 Query 215498 AGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAA 215557 ||||| || || || || | || ||||| || | ||||| || | |||| || Sbjct 282 AGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAG 341 Query 215558 TGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCT 215617 || | || |||||||| | | ||| | || | | || || | ||||| || || Sbjct 342 TGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGTTGCT 401 Query 215618 GCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGT 215677 | || ||| | |||||| | || |||||||||||||||||| ||||| | | Sbjct 402 TGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTT 461 Query 215678 GTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGT 215737 || |||| ||| |||||||| || || ||||||||||| |||| |||||| | ||| Sbjct 462 GTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGT 521 Query 215738 CAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTT 215797 || | | || || |||| ||||| | ||||| |||||| || || | ||| || Sbjct 522 CAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTT 581 Query 215798 GTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 || ||||| || || || |||||| | ||||| |||||||| || |||| || |||||| Sbjct 582 GTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGT 641 Query 215858 GTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATC 215917 || || || |||||||| || ||||||||| |||||| | ||||||||||| || | Sbjct 642 GTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTT 701 Query 215918 AGAGAGACAACTGAGCAAGA-ATCTCAG----AACTACGGTTACAAGTTCGGACAAGAGG 215972 ||| |||| ||| || || | || || || || ||||| || ||||| | Sbjct 702 GCAGA---AACT--GCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAG 756 Query 215973 AGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACG 216032 | ||||| || | ||| ||| || || ||||| |||||| | ||||| || ||||| | Sbjct 757 ATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATG 816 Query 216033 CATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTA 216092 | || ||||| ||||| | ||||||||||||||||| ||||| | || |||||| | | Sbjct 817 CTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGA 876 Query 216093 TCTGG 216097 | ||| Sbjct 877 TTTGG 881 >seq75038 Length=481 Score = 271 bits (300), Expect = 1e-67 Identities = 310/414 (75%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 215655 TAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAG 215714 |||| ||| | |||||||| ||| ||||| || | || || | ||||| ||| | Sbjct 478 TAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCGG 419 Query 215715 TATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCT 215774 |||| | | || ||| | ||||| || || || || |||| ||||| | ||||| | Sbjct 418 TATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTT 359 Query 215775 CTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCAT 215834 | ||||| ||||| | ||| |||||||||| || ||||| || ||| | ||||| || | Sbjct 358 CAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTT 299 Query 215835 TCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTT 215894 | || ||||||||||| |||||||| || ||||||||||| || ||||| ||||| |||| Sbjct 298 TTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTT 239 Query 215895 CACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTAC-GGT 215953 || | ||||| || || |||| | || |||||||| | ||||| | || | | ||| Sbjct 238 CATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCA-ACAAATGCTGGT 180 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013 || | ||||||||||| || |||||||| ||||| ||||| ||||| ||||| |||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTC 216067 || | || |||||||| || |||||||| |||||| | | | || |||||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTC 66 >seq12672 Length=424 Score = 253 bits (280), Expect = 3e-62 Identities = 273/359 (76%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 215710 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769 ||| ||||| | | || ||| | ||||| || || || || |||| ||||| | || Sbjct 2 TGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGG 61 Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829 ||| || ||||| ||||| | ||| |||||||||| || ||||| || ||| | ||||| Sbjct 62 AATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCA 121 Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCA 215889 || || || ||||||||||| |||||||| || ||||||||||| || ||||| ||||| Sbjct 122 TCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCA 181 Query 215890 CGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTA 215949 |||||| | ||||| || || |||| | || |||||||| | ||||| | || | Sbjct 182 TGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATC-AACAAATG 240 Query 215950 C-GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACT 216008 | ||||| | ||||||||||| || |||||||| ||||| ||||| ||||| ||||| | Sbjct 241 CTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATT 300 Query 216009 TTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTC 216067 ||||||| | || |||||||| || |||||||| |||||| | | | || |||||| Sbjct 301 TTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTC 359 >seq174641 Length=312 Score = 203 bits (224), Expect = 5e-47 Identities = 217/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 215627 GGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTAC 215686 || ||| | |||||| | || |||||||||||||||||| ||||| | ||| |||| | Sbjct 310 GGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTC 251 Query 215687 TCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCT 215746 || |||||||| || || ||||||||||| |||| |||||| | ||||| | | Sbjct 250 TCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGC 191 Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || || |||| ||||| | ||||| |||||| || || | ||| |||| ||||| Sbjct 190 TTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAA 131 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 || || || |||||| | ||||| |||||||| || |||| || |||||||| || || Sbjct 130 GCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGA 71 Query 215867 GGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCT 215913 |||||||| || ||||||||| |||||| | ||||||||||| || Sbjct 70 GGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq75039 Length=421 Score = 188 bits (208), Expect = 1e-42 Identities = 274/382 (72%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||||| ||| ||||| ||| || || || | || ||||||||||||| || | Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 |||||||| | | |||||||| || || || | || || | ||||||||| Sbjct 321 ATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGTTGCTGCACCT 262 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || ||||| || ||||| | || || ||| ||||||| ||| | ||||| ||||| Sbjct 261 CCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAAT 202 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || | || ||| || | |||| |||||||||||| || ||||| || || || || Sbjct 201 ATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATT 142 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | | || |||||||| || ||||||||||||| ||| | || | Sbjct 141 TGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGTT 82 Query 215594 TTCCACTTCCTCATTGGTATTTCT-GC-ATACTGCGGAAGACAGTGGGAACTTTCTTACA 215651 | |||||| || | || |||| | || ||| || ||| | | ||||||||||| | Sbjct 81 TGCCACTTTTTCTTAGGAATTTGTTGCTATA-TG-GGACGTGAATGGGAACTTTCGTTTC 24 Query 215652 GATTAGGTATGAGACCTTGGAT 215673 | |||| ||| | |||||||| Sbjct 23 GTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 176 bits (194), Expect = 7e-39 Identities = 232/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||||| ||| ||||| ||| || || || | || ||||||||||||| || | Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 |||||||| | | |||||||| || || || | || || | ||||||||| Sbjct 189 ATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGTTGCTGCACCT 248 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || ||||| || ||||| | || || ||| ||||||| ||| | ||||| ||||| Sbjct 249 CCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAAT 308 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || | || ||| || | |||| |||||||||||| || ||||| || || || || Sbjct 309 ATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATT 368 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | | || |||||||| || ||||||||||||| ||| | || | Sbjct 369 TGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGTT 428 Query 215594 TTCCACTTCCTCATTGGTATTT 215615 | |||||| || | || |||| Sbjct 429 TGCCACTTTTTCTTAGGAATTT 450 >seq174640 Length=289 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 || || ||||| || ||||| || ||||| || | ||| ||| || || ||||| ||| Sbjct 255 GGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTT 196 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 ||| | ||||| || ||||| || || ||||| ||||| | ||||||||||||||||| Sbjct 195 GGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTA 136 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 ||||| | || |||||| |||| ||| || ||| | || || || ||||| ||| Sbjct 135 GCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTTC 76 Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGA 216168 ||| | || ||||| ||||||||||| || || |||| Sbjct 75 AACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGA 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742725018661440