Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq174639 297 2e-75 seq75038 297 2e-75 seq12672 262 5e-65 seq75039 217 2e-51 seq25321 194 2e-44 seq174641 156 5e-33 seq174640 140 4e-28 seq251946 127 2e-24 >seq174639 Length=919 Score = 297 bits (328), Expect = 2e-75 Identities = 529/764 (69%), Gaps = 10/764 (1%) Strand=Plus/Plus Query 169710 CACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGC 169769 ||||| || || |||| |||| || || ||| || | ||| |||| ||| ||| | Sbjct 98 CACAACAAATCGTCTCTACATTGGGTGCTTTGGTATCCTAATGTTCCC---TCTTTTAAC 154 Query 169770 AGCAGCAACC--TGCTT-TATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGG 169826 |||||| ||||| |||| ||||| || || || | || || || ||||| Sbjct 155 TTTAGCAACTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGG 214 Query 169827 AATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGT 169886 ||| |||||||| ||||| || ||| | | ||||| || ||||| || | || || || Sbjct 215 AATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGT 274 Query 169887 TGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCT 169946 | ||| ||| || || || || | || |||||||| ||||||| || | Sbjct 275 AATACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATT 334 Query 169947 AGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGG 170006 |||||||| || ||||| |||||| | |||||||| || | | || || | | || Sbjct 335 TGATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGG 394 Query 170007 AATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTG 170066 | || | ||||||||| | |||||| | | | | ||||||||| | || || Sbjct 395 TGTTGCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATG 454 Query 170067 GATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCC 170126 ||| | |||||| | || || || || |||||| || || ||||| | || ||||| Sbjct 455 GATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCC 514 Query 170127 TTTCGGTCAGGG-ATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACT 170185 | ||||| | | |||| || || ||||||||| |||| || || || ||||| | Sbjct 515 AATTGGTCAAGCTAGCTTT-TCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATT 573 Query 170186 TCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGG 170245 | ||| | || ||||||||||| || |||||| | ||||| ||||||||||| ||| | Sbjct 574 TTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAG 633 Query 170246 TTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTT 170305 | |||||| | || ||||| || | || |||||||| |||||| | || ||||||| Sbjct 634 TAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTT 693 Query 170306 CTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACT-ATGGATACAAATTCGGACAA 170364 | || | ||| || ||| | | | | || | |||||| || || || ||| Sbjct 694 CACTTCTTGCAGAAACTGCAG-GAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAA 752 Query 170365 GAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAA 170424 ||||| ||||| || | ||| ||||| ||||| || ||||||||||| || || ||| Sbjct 753 GAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAA 812 Query 170425 TATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGC 170468 |||||| ||| || || ||||||||||||||||||||| || Sbjct 813 TATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGC 856 >seq75038 Length=481 Score = 297 bits (328), Expect = 2e-75 Identities = 359/484 (74%), Gaps = 6/484 (1%) Strand=Plus/Minus Query 170048 GTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCG 170107 || |||| ||||| |||||||| |||||| ||||| | |||||| |||| || | Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 170108 CTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTA 170167 | ||||| ||| | || || | ||||| ||||| || || || ||||||||| |||| | Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 170168 TCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACC 170227 | ||||| || || || || ||| | || |||||||||||||| || ||| | ||||| | Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 170228 CATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACG 170287 | || |||||| ||| || |||||| |||| || || || | || || || ||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 170288 GTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATG 170347 ||||| | || || || || |||| | || ||||| || || || ||| || || Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 170348 GATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTG 170407 | || | |||||||||||||||||||||||| |||||||| ||||||||||| || |||| Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 170408 GTAGACTTATCTTCCAATATGCTAGCTTTAACAATAG-TCGTAGTCTTCAC--TTCTTCC 170464 || | | || |||||||||||| |||| ||||| || |||| || |||||| Sbjct 121 GTCGTTTAATTTTCCAATATGCTT-CTTT--CAATAACTCACGCTCTTTACATTTCTTCT 65 Query 170465 TTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCAT 170524 | |||| | |||||||| | || ||||| ||||| | || |||| |||||||||| Sbjct 64 TAGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCAT 5 Query 170525 TTAA 170528 |||| Sbjct 4 TTAA 1 >seq12672 Length=424 Score = 262 bits (290), Expect = 5e-65 Identities = 316/425 (74%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166 || ||||| ||| | || || | ||||| ||||| || || || ||||||||| |||| Sbjct 3 GCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGA 62 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 || ||||| || || || || ||| | || |||||||||||||| || ||| | ||||| Sbjct 63 ATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCAT 122 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCAC 170286 || || |||||| ||| || |||||| |||| || || || | || || || ||||| Sbjct 123 CCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCAT 182 Query 170287 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTAT 170346 |||||| | || || || || |||| | || ||||| || || || ||| || | Sbjct 183 GGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCT 242 Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || || | |||||||||||||||||||||||| |||||||| ||||||||||| || ||| Sbjct 243 GGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTT 302 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAAT-AGTCGTAGTCTT--CACTTCTTC 170463 ||| | | || |||||||||||| |||| |||| | || |||| || |||||| Sbjct 303 GGTCGTTTAATTTTCCAATATGCT-TCTTT--CAATAACTCACGCTCTTTACATTTCTTC 359 Query 170464 CTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCA 170523 | |||| | |||||||| | || ||||| ||||| | || |||| ||||||||| Sbjct 360 TTAGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCA 419 Query 170524 TTTAA 170528 ||||| Sbjct 420 TTTAA 424 >seq75039 Length=421 Score = 217 bits (240), Expect = 2e-51 Identities = 282/390 (72%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 169680 ATGGCCTCAGTTTACTGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTT 169739 |||| ||| ||| ||| ||| | || || ||| | ||||| | ||| |||||||||| Sbjct 391 ATGGGCTCGCTTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTT 332 Query 169740 CGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCAT 169799 || || | ||||| ||| | ||||| |||| | | ||||| ||||||| | Sbjct 331 TGGAGTTTGCATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGT 272 Query 169800 CGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTA 169859 || || || || || || || |||||||| | |||||||| | |||||||| | || Sbjct 271 TGCTGCACCTCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATA 212 Query 169860 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTT 169919 ||| ||||| || || | || || || |||| ||||||||||||| ||| | || || Sbjct 211 TGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTT 152 Query 169920 CTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCA 169979 ||||| ||||||||||| || || ||||||| ||| | ||||| ||||| |||||||| Sbjct 151 TTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCA 92 Query 169980 ATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 170039 |||| || | | |||||| | | ||||| | | ||| ||||| | | |||||||| Sbjct 91 ATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 32 Query 170040 ATCATACCGTTTAGGTATGCGTCCTTGGAT 170069 || | ||| |||| ||||| |||||||| Sbjct 31 TTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 194 bits (214), Expect = 2e-44 Identities = 259/360 (72%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 169680 ATGGCCTCAGTTTACTGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTT 169739 |||| ||| ||| ||| ||| | || || ||| | ||||| | ||| |||||||||| Sbjct 119 ATGGGCTCGCTTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTT 178 Query 169740 CGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCAT 169799 || || | ||||| ||| | ||||| |||| | | ||||| ||||||| | Sbjct 179 TGGAGTTTGCATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGT 238 Query 169800 CGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTA 169859 || || || || || || || |||||||| | |||||||| | |||||||| | || Sbjct 239 TGCTGCACCTCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATA 298 Query 169860 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTT 169919 ||| ||||| || || | || || || |||| ||||||||||||| ||| | || || Sbjct 299 TGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTT 358 Query 169920 CTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCA 169979 ||||| ||||||||||| || || ||||||| ||| | ||||| ||||| |||||||| Sbjct 359 TTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCA 418 Query 169980 ATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 170039 |||| || | | |||||| | | ||||| | | ||| ||||| | | |||||||| Sbjct 419 ATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq174641 Length=312 Score = 156 bits (172), Expect = 5e-33 Identities = 210/290 (72%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 170021 TGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCAT 170080 |||||||| | |||||| | | | | ||||||||| | || ||||| | |||||| | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 170081 ATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGG-A 170139 || || || || |||||| || || ||||| | || ||||| | ||||| | | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 170140 TCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTC 170199 |||| || || ||||||||| |||| || || || ||||| || ||| | || ||| Sbjct 192 GCTTT-TCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTC 134 Query 170200 CAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTC 170259 |||||||| || |||||| | ||||| ||||||||||| ||| || |||||| | || Sbjct 133 CAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTT 74 Query 170260 GGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCT 170309 ||||| || | || |||||||| |||||| | || |||||||| || Sbjct 73 GGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq174640 Length=289 Score = 140 bits (154), Expect = 4e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 170346 TGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTT 170405 |||||| || || || |||||||| ||||| || | ||| ||||| ||||| || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 170406 TGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCT 170465 ||||||||| || || ||||||||| ||| || || ||||||||||||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 170466 TGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATT 170525 || | | || || | | || ||||| || || | || | | |||||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 170526 TAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565 ||| | ||||| || ||||||||||| || ||| ||||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq251946 Length=233 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 169915 CACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCT 169974 ||||| ||||| ||||||||||| ||| || ||||||| ||||| ||||| ||||| ||| Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 169975 TATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGG 170034 ||| |||| || | | || || | | || ||| | || || ||| | ||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 170035 GAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTG 170094 |||||| || ||||||||||||||||| ||||||| ||| || | | || || || Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 170095 TCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGA 170139 |||||||| || || || | || ||||| | ||||| ||| Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGGA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581004539203200