Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq174639 369 4e-97 seq75038 309 3e-79 seq12672 269 3e-67 seq75039 233 2e-56 seq25321 212 7e-50 seq174641 167 3e-36 seq251946 147 2e-30 seq174640 134 2e-26 seq174642 111 2e-19 >seq174639 Length=919 Score = 369 bits (408), Expect = 4e-97 Identities = 580/822 (71%), Gaps = 14/822 (2%) Strand=Plus/Minus Query 84123 GCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAG 84182 ||||| || || || || || || | |||||||| |||| ||||||||||| || | | Sbjct 910 GCCATTGTACTTACTCCAAGTGCTGTGAACCAAATCCCAATAACTGGCCAAGCTGCTAGG 851 Query 84183 AAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAG 84242 || ||||| ||| |||| || |||||||||||||| || || || || | ||| || Sbjct 850 AAGAAGTGAAGACTACGAGAGTTATTGAAGGAAGCATATTGAAATATGAGTCTACCAAAA 791 Query 84243 TAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAG 84302 || || || || || || |||||||||| ||||||||||| ||||| || ||| Sbjct 790 TAACCATGGGCTGCTGATATGCTATAAGTTTCATCTTCTTGACCAAACTTATATCCAACA 731 Query 84303 TTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGC 84362 ||| | | || | ||| ||||||| | || ||||| || || | |||||||||| Sbjct 730 TTTAGGCTAATATCTCCTGCAGTTTCTGCAAGAAGTGAAGATGTAACTAATGAACCATGC 671 Query 84363 ATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGC 84422 |||||| |||| | || || ||||||||||| ||||| | || || || |||||| Sbjct 670 ATTGCACTAAATAATGAACCTCCAAATACACCAGCTACTCCTAGGATATGGAATGGATGC 611 Query 84423 ATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCA 84482 || | ||||||||||| || ||||| |||||||| | || || ||||| || || Sbjct 610 ATTAAAATGTTATGTTCTGCTTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCT 551 Query 84483 AGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGAT 84542 | ||||| ||||| || || | |||| || | ||||| |||| ||||| ||| | Sbjct 550 AAAGGCATTCCATCGGAAAAGCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAA 491 Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGAC-GATA 84601 || ||| |||| || || ||| |||| ||| | |||||||| | |||||| | | || | Sbjct 490 GCTGCTACAACAGGTGCTGAGAAAGCTACAAATATCCATGGTCTCATACCTAATCTGAAA 431 Query 84602 -TGAAAGTTCCCATTCACGACCCAT---GTAAGCAAATGCACCAATCAGGAAGTGAAAGA 84657 |||| ||||||||| | |||||| |||||| |||||| || || |||| | Sbjct 430 CTGAA--TTCCCATTCTCTACCCATCCAACAAGCAA---CACCAAGCATAAAATGAAGTA 376 Query 84658 CAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAA 84717 | |||| |||||| | ||||||||||||| || || || | | || ||||||| Sbjct 375 CTACAAATTGATATGTACCACCATTATATAAGCACTCATCAAATCCATTTGACTCCCAAA 316 Query 84718 TAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGT 84777 ||||||||||| | |||||||||||||| ||| | ||| || || | || |||| Sbjct 315 CTGGATAGAAATGAACCCCAATAGCATTAGAACTTGGTATTACAGCTCCTGTTATAATGT 256 Query 84778 TGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGG 84837 | || || || | || || ||||| ||||| || | || || |||||||| |||| | Sbjct 255 TATTGCCATAAAGAAGTGAGCCAGCTACTGGTTCTCTTATTCCATCAATATCTACTGCAG 196 Query 84838 GTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGT--AGAGTTGGAATCAT 84895 ||||| || || || |||| || | ||| || |||| | || |||| ||| Sbjct 195 GTGCAAGAATAAAAGCTGTGATATAAGCAATAGTTGC-TAAAGTTAAAAGAGGGAA-CAT 138 Query 84896 AAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGA 84937 || | ||||| || |||| |||| ||| || | ||||| Sbjct 137 TAGGATACCAAAGCACCCAATGTAGAGACGATTTGTTGTGGA 96 >seq75038 Length=481 Score = 309 bits (342), Expect = 3e-79 Identities = 357/481 (74%), Gaps = 0/481 (0%) Strand=Plus/Plus Query 84117 TTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCA 84176 ||||||||||| || || || | || || |||||||| ||||| || |||||| | Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 84177 GCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGA 84236 || ||||| || || | ||| || || ||||| |||||||| ||||| || | |||| Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 84237 CCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAA 84296 || || || || || || || ||||| ||||| ||||| |||||||| ||||| | ||| Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 84297 CCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAA 84356 ||| ||| ||| ||||||| || ||||| || |||| || ||||| || | |||| Sbjct 181 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 240 Query 84357 CCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAG 84416 |||||||| ||||| |||| | ||||| || |||||||| || || ||||| ||||| Sbjct 241 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 300 Query 84417 GGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAG 84476 |||||||| | || ||||| || || ||||| |||| ||| | ||||| |||||||| Sbjct 301 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 360 Query 84477 ATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACA 84536 || || | ||||| ||||| || || || ||||| || | || || | | ||||| Sbjct 361 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 420 Query 84537 GCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGA 84596 |||| || |||||||||||| | || ||||| ||| ||||| || ||||| || ||| Sbjct 421 GCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTAGA 480 Query 84597 C 84597 | Sbjct 481 C 481 >seq12672 Length=424 Score = 269 bits (298), Expect = 3e-67 Identities = 314/424 (74%), Gaps = 0/424 (0%) Strand=Plus/Minus Query 84117 TTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCA 84176 ||||||||||| || || || | || || |||||||| ||||| || |||||| | Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 84177 GCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGA 84236 || ||||| || || | ||| || || ||||| |||||||| ||||| || | |||| Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 84237 CCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAA 84296 || || || || || || || ||||| ||||| ||||| |||||||| ||||| | ||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 84297 CCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAA 84356 ||| ||| ||| ||||||| || ||||| || |||| || ||||| || | |||| Sbjct 244 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 185 Query 84357 CCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAG 84416 |||||||| ||||| |||| | ||||| || |||||||| || || ||||| ||||| Sbjct 184 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 125 Query 84417 GGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAG 84476 |||||||| | || ||||| || || ||||| |||| ||| | ||||| |||||||| Sbjct 124 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 65 Query 84477 ATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACA 84536 || || | ||||| ||||| || || || ||||| || | || || | | ||||| Sbjct 64 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 5 Query 84537 GCAG 84540 |||| Sbjct 4 GCAG 1 >seq75039 Length=421 Score = 233 bits (258), Expect = 2e-56 Identities = 285/384 (74%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 84576 ATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTA--AGCAA 84633 ||||| || ||||| || |||||| | ||||||||||||||||| ||||| || | ||| Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCCCATATAGCAACAA 61 Query 84634 ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATT 84693 || | | | | ||||| | |||| | ||||||||||||||||||||||||||||| Sbjct 62 ATTC--CTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATT 119 Query 84694 CGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATG 84753 | || | | || ||||||||||| ||||| ||||||| |||||| || || || | | Sbjct 120 CATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAG 179 Query 84754 GAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCAC 84813 ||| | || || | ||| || |||||||| || | | ||||||| || || |||| Sbjct 180 GAATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCAC 239 Query 84814 GGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTG 84872 | || || |||||||| ||||| |||||| |||| || ||||| || || ||||| || Sbjct 240 GAATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGA-GGTA 298 Query 84873 GCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTA 84932 || | | || |||||||||||| | |||||||||||||| ||| | ||||| | Sbjct 299 GCTGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCT 358 Query 84933 GTGGAGGTGACCCAATCACAGAAG 84956 || || | ||| ||||| ||| Sbjct 359 GTACTAGTAATCCATTCACAAAAG 382 >seq25321 Length=478 Score = 212 bits (234), Expect = 7e-50 Identities = 262/354 (74%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 84606 AGTTCCCATTCACGACCCATGTA--AGCAAATGCACCAATCAGGAAGTGAAAGACAACAA 84663 |||||||||||||| ||||| || | ||||| | | | | ||||| | |||| | Sbjct 478 AGTTCCCATTCACGTCCCATATAGCAACAAATTC--CTAAGAAAAAGTGGCAAACAATTA 421 Query 84664 GTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGAT 84723 |||||||||||||||||||||||||||||| || | | || ||||||||||| |||| Sbjct 420 ATTGATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGAT 361 Query 84724 AGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTC 84783 | ||||||| |||||| || || || | |||| | || || | ||| || ||||||| Sbjct 360 AAAAATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTC 301 Query 84784 CGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCAC 84843 | || | | ||||||| || || ||||| || || |||||||||||||| |||||| Sbjct 300 CATATAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAG 241 Query 84844 CAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTT 84902 |||| || ||||| || || ||||| || || | | || |||||||||||| | | Sbjct 240 CAACAAAAGCAATAATAAATACAGA-GGTAGCTGTTAATAAAGTTGGAATCATGCAAACT 182 Query 84903 CCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 ||||||||||||| ||| | ||||| | || || | ||| ||||| ||| Sbjct 181 CCAAACCAACCAATATATAATCGGTTATCTGTACTAGTAATCCATTCACAAAAG 128 >seq174641 Length=312 Score = 167 bits (184), Expect = 3e-36 Identities = 224/308 (73%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 84319 CTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAG 84378 ||| ||||||| | || ||||| || || | |||||||||||||||| |||| | Sbjct 7 CTGCAGTTTCTGCAAGAAGTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAATG 66 Query 84379 CTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTT 84438 || || ||||||||||| ||||| | || || || |||||||| | |||||||||| Sbjct 67 AACCTCCAAATACACCAGCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATGTT 126 Query 84439 CCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAG 84498 | || ||||| |||||||| | || || ||||| || || | ||||| ||||| | Sbjct 127 CTGCTTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATCGG 186 Query 84499 AGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAG 84558 | || | |||| || | ||||| |||| ||||| ||| | || ||| |||| || | Sbjct 187 AAAAGCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAAGCTGCTACAACAGGTG 246 Query 84559 CAGAGTAAGCAACACAGATCCATGGACGCATACCGAGAC-GATA-TGAAAGTTCCCATTC 84616 | ||| |||| ||| | |||||||| | |||||| | | || | |||| ||||||||| Sbjct 247 CTGAGAAAGCTACAAATATCCATGGTCTCATACCTAATCTGAAACTGAA--TTCCCATTC 304 Query 84617 ACGACCCA 84624 | ||||| Sbjct 305 TCTACCCA 312 >seq251946 Length=233 Score = 147 bits (162), Expect = 2e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 84507 CCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAA 84566 ||||| || | ||||| ||||| || || || | ||| ||||| || || || | | || Sbjct 5 CCTTGACCAATTGGATATACAAGAAAAACTGCTGCTGCTGCTGCTACAGGTGCCGTGAAA 64 Query 84567 GCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATG 84626 |||||| ||||||||||||||||||| | |||||| |||||||| |||||||| || Sbjct 65 GCAACAGAGATCCATGGACGCATACCTAAACGATAACTTAGTTCCCACTCACGACCAATA 124 Query 84627 TAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATAT 84686 ||| | | | || | | || || | |||| | || |||||| |||||||||||| Sbjct 125 TAACAACAGACCCCTAATAAAAAATGTAGCACAATCAATTCATAAGGGCCACCATTATAT 184 Query 84687 AGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATG 84730 | |||||| || | | ||| ||||||||||| ||||| || || Sbjct 185 AACCATTCATCTAAAGATGCAGCTTCCCAAATTGGATAAAAGTG 228 >seq174640 Length=289 Score = 134 bits (148), Expect = 2e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || |||||||| || ||||| | || || ||||| || || || || || || | ||| Sbjct 50 TGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCCAAGTGCTGTGAAC 109 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| |||| ||||||||||| || | ||| ||||| ||| |||| || |||||| Sbjct 110 CAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTTATTGAAG 169 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 |||||||| || || || || | ||| || || || || || || || |||||||| Sbjct 170 GAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCTATAAGTT 229 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCA 84299 || ||||||||||| ||||| || ||| Sbjct 230 TCATCTTCTTGACCAAACTTATATCCA 256 >seq174642 Length=303 Score = 111 bits (122), Expect = 2e-19 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 84628 AAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATA 84687 |||||| |||||| || || |||| || |||| |||||| | ||||||||||||| Sbjct 7 AAGCAA---CACCAAGCATAAAATGAAGTACTACAAATTGATATGTACCACCATTATATA 63 Query 84688 GCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAG 84747 || || || | | || ||||||| ||||||||||| | ||||||||||||| Sbjct 64 AGCACTCATCAAATCCATTTGACTCCCAAACTGGATAGAAATGAACCCCAATAGCATTAG 123 Query 84748 AGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTG 84807 | ||| | ||| || || | || ||||| || || || | || || ||||| |||| Sbjct 124 AACTTGGTATTACAGCTCCTGTTATAATGTTATTGCCATAAAGAAGTGAGCCAGCTACTG 183 Query 84808 GCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842 | || | || || |||||||| |||| |||||| Sbjct 184 GTTCTCTTATTCCATCAATATCTACTGCAGGTGCA 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569466747294240