Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq174639 264 3e-66 seq75038 251 2e-62 seq12672 239 1e-58 seq75039 178 4e-40 seq174641 174 5e-39 seq25321 167 7e-37 seq174640 118 3e-22 >seq174639 Length=919 Score = 264 bits (292), Expect = 3e-66 Identities = 495/724 (68%), Gaps = 10/724 (1%) Strand=Plus/Plus Query 25916 GCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGA 25975 ||||| | |||||||| ||||| ||| | || ||||| | ||||| | | || || Sbjct 192 GCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGC 251 Query 25976 AACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTAC 26035 || || || ||| ||||||| || | || ||||| || || || | ||||| || Sbjct 252 AATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTAT 311 Query 26036 CCGATCTGGGAAGC---TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAA 26092 || | ||||| | ||| | | || ||||| |||| ||||| || |||||||| Sbjct 312 CCAGTTTGGGAGTCAAATGG---ATTTGATGAGTGCTTATATAATGGTGGTACATATCAA 368 Query 26093 CTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCAT--ATGCAGGGAGACAGTGGGAAC 26150 | | | | || || | | || || || | ||| || ||| | |||||| Sbjct 369 TTTGTAGTACTTCATTTTATGCTTGGTGTTGCTTGTTGGATG--GGTAGAGAATGGGAAT 426 Query 26151 TATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCG 26210 | || |||| |||| |||||||||||||||||||| || | ||||||| | | Sbjct 427 TCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAG 486 Query 26211 CAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGC 26270 ||||| | ||||| || | |||||||| | || |||| || ||| |||||||||| Sbjct 487 CAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGC 546 Query 26271 CTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATAC 26330 || | || || ||| |||||||| |||||| | || ||||||||||||||||| || Sbjct 547 CTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTT 606 Query 26331 TCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTG 26390 | ||||| ||||||||||| || || ||||| || || || || | | || || Sbjct 607 TAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTG 666 Query 26391 CTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCAC 26450 | ||||| || || ||||| || |||||| |||||||||| ||| || | | Sbjct 667 CAATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACTGCAGGAGATATTAGCC 726 Query 26451 AGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACG 26510 ||| ||| ||||||||||| ||||| || || || |||| || || || || | Sbjct 727 TAAATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATG 786 Query 26511 GGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATT 26570 | || ||||| ||| | || ||||| ||||| || |||||| ||| |||||| | Sbjct 787 GTTATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACT 846 Query 26571 TCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAA 26630 |||| || || ||||||| ||| |||| || ||| | ||| | | || | | |||| Sbjct 847 TCTTCCTAGCAGCTTGGCCAGTTATTGGGATTTGGTTCACAGCACTTGGAGTAAGTACAA 906 Query 26631 TGGC 26634 |||| Sbjct 907 TGGC 910 >seq75038 Length=481 Score = 251 bits (278), Expect = 2e-62 Identities = 343/479 (72%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 ||||||||| | || ||||| ||| || ||| ||| ||| | | || || || Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || || ||| |||| || | || ||||| ||| |||||||||||| | || || Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 || || ||||| || |||||| | || ||||||||||| |||||||| | ||||| || Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || |||||| ||||| ||||| || || ||||| | | || |||||||||| || Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 ||||||||||| ||| | ||| ||||| || || | | ||| ||| ||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 |||| || || ||||| ||||| |||||||| ||||| || ||||| || || ||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 | |||||||| || ||||| ||| |||||| || ||| | |||||||| | ||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAA 26640 | |||||| || ||||| || ||| | || ||| | || || | |||||||||||||| Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 239 bits (264), Expect = 1e-58 Identities = 306/422 (73%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || || ||| |||| || | || ||||| ||| |||||||||||| | || Sbjct 3 GCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGA 62 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 || || || ||||| || |||||| | || ||||||||||| |||||||| | ||||| Sbjct 63 ATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCAT 122 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 || || |||||| ||||| ||||| || || ||||| | | || |||||||||| Sbjct 123 CCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCAT 182 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||||||||| ||| | ||| ||||| || || | | ||| ||| | Sbjct 183 GGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCT 242 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || |||| || || ||||| ||||| |||||||| ||||| || ||||| || || ||| Sbjct 243 GGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTT 302 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || | |||||||| || ||||| ||| |||||| || ||| | |||||||| | Sbjct 303 GGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTA 362 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 |||| |||||| || ||||| || ||| | || ||| | || || | |||||||||||| Sbjct 363 GCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTT 422 Query 26639 AA 26640 || Sbjct 423 AA 424 >seq75039 Length=421 Score = 178 bits (196), Expect = 4e-40 Identities = 273/383 (71%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||||| ||| |||| ||||| || ||||| | ||| | || ||||| || || Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || ||| | |||| || | ||| ||||| |||| || | || ||||| Sbjct 321 ATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGTTGCTGCACC 263 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || ||| | || |||||||| Sbjct 262 TCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 203 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || |||| || | | || | || |||||||| || |||||||||| || || Sbjct 202 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 143 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||||| | | || || |||||||| ||||| ||||| |||||| | ||| | Sbjct 142 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 83 Query 26101 CTTCCACTTCTTAATAGG-AGTAGCAGC-ATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | |||||| || |||| | | | || ||||| || | | |||||||| || | Sbjct 82 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATG--GGACGTGAATGGGAACTTTCGTTT 25 Query 26159 AGACTAGGAATGAGACCATGGAT 26181 | ||||||||| | || ||||| Sbjct 24 CGTCTAGGAATGCGCCCTTGGAT 2 >seq174641 Length=312 Score = 174 bits (192), Expect = 5e-39 Identities = 218/299 (73%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194 || ||| | |||||| | || |||| |||| |||||||||||||||||||| || | Sbjct 310 GGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTC 251 Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254 ||||||| | |||||| | ||||| || | |||||||| | || |||| || Sbjct 250 TCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGC 191 Query 26255 TTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 26314 ||| |||||||||||| | || || ||| |||||||| |||||| | || |||||| Sbjct 190 TTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAA 131 Query 26315 GCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGT 26374 ||||||||||| || | ||||| ||||||||||| || || ||||| || || || Sbjct 130 GCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGA 71 Query 26375 GGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAAC 26433 || | | || ||| ||||| || || ||||| || |||||| |||||||||| Sbjct 70 GGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAAC 12 >seq25321 Length=478 Score = 167 bits (184), Expect = 7e-37 Identities = 230/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||||| ||| |||| ||||| || ||||| | ||| | || ||||| || || Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || ||| | |||| || | ||| ||||| |||| || | || ||||| Sbjct 189 ATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGTTGCTGCACC 247 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || || ||||| ||||| || ||||| || ||||| || || ||| | || |||||||| Sbjct 248 TCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 307 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || |||| || | | || | || |||||||| || |||||||||| || || Sbjct 308 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 367 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||||| | | || || |||||||| ||||| ||||| |||||| | ||| | Sbjct 368 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 427 Query 26101 CTTCCACTTCTTAATAGGA 26119 | |||||| || ||||| Sbjct 428 TTGCCACTTTTTCTTAGGA 446 >seq174640 Length=289 Score = 118 bits (130), Expect = 3e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 ||| ||||||||||| ||||| || || || |||| || || || || || || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 ||| ||| | || ||||| ||||| || |||||| ||| |||||| ||||| || Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 || ||||||| ||| |||| || ||| | ||| | | || | | |||||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTC 26667 ||| |||||||||| ||||| ||||| || Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATC 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146285530085472