Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq75038 300 5e-77 seq12672 262 1e-65 seq75039 217 4e-52 seq25321 208 2e-49 seq251946 118 3e-22 >seq75038 Length=481 Score = 300 bits (332), Expect = 5e-77 Identities = 354/479 (74%), Gaps = 0/479 (0%) Strand=Plus/Plus Query 36117 TTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCA 36176 ||||| ||||| || || | ||| | || || | ||| || | | || |||||| | Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 36177 GCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 36236 || | ||||||||||||| ||| ||||| || |||||| ||||| || | | Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296 ||||| || ||||| || || ||||||||||| || ||||||||||| |||||| |||| Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 36356 ||| || |||||| |||||||||||||||| | ||| |||||||| | Sbjct 181 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 240 Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || |||||||||| ||||| | ||||| || || || || ||||| | |||||| || Sbjct 241 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 300 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 |||||||| | ||||| || ||||| || || |||| ||||||||||||||| |||||| Sbjct 301 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 360 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || | |||||| ||||| || || ||||| |||| ||||| | ||| ||||| Sbjct 361 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 420 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAG 36595 ||| || |||||||| || |||||||||||||| ||||| || | ||| ||||| Sbjct 421 GCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTAG 479 >seq12672 Length=424 Score = 262 bits (290), Expect = 1e-65 Identities = 312/423 (74%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 36117 TTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCA 36176 ||||| ||||| || || | ||| | || || | ||| || | | || |||||| | Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 36177 GCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 36236 || | ||||||||||||| ||| ||||| || |||||| ||||| || | | Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296 ||||| || ||||| || || ||||||||||| || ||||||||||| |||||| |||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 36356 ||| || |||||| |||||||||||||||| | ||| |||||||| | Sbjct 244 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 185 Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || |||||||||| ||||| | ||||| || || || || ||||| | |||||| || Sbjct 184 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 125 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 |||||||| | ||||| || ||||| || || |||| ||||||||||||||| |||||| Sbjct 124 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 65 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || | |||||| ||||| || || ||||| |||| ||||| | ||| ||||| Sbjct 64 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 5 Query 36537 GCA 36539 ||| Sbjct 4 GCA 2 >seq75039 Length=421 Score = 217 bits (240), Expect = 4e-52 Identities = 276/380 (73%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635 ||||| || | ||| ||||| | | | ||||||||||| ||||||| || | Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCCCATATAGCAACAA 61 Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695 || || | || ||||||| | ||||| | |||||| ||||| || ||||||| ||| || Sbjct 62 ATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTCA 121 Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755 || | | ||||||||||| ||||| || || || | ||| |||||||| || | || Sbjct 122 TCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGGA 181 Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815 | || ||||| | || || ||||||||||| | ||||| || || ||||| |||||| Sbjct 182 ATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACGA 241 Query 36816 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 36875 || ||||| ||||| || ||||| ||||||||||| ||||| | |||| | | ||| Sbjct 242 ATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTAGCT 301 Query 36876 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 36935 ||||| | | || ||||| || |||||||| || | ||| | ||||| | |||| Sbjct 302 GTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCTGTA 361 Query 36936 CTTGTAACCCAGTCACATAA 36955 || |||| ||| ||||| || Sbjct 362 CTAGTAATCCATTCACAAAA 381 >seq25321 Length=478 Score = 208 bits (230), Expect = 2e-49 Identities = 256/350 (73%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 36606 AGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGT 36665 |||||||||| ||||||| || | || || | || ||||||| | ||||| | | Sbjct 478 AGTTCCCATTCACGTCCCATATAGCAACAAATTCCTAAGAAAAAGTGGCAAACAATTAAT 419 Query 36666 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 36725 ||||| ||||| || ||||||| ||| || || | | ||||||||||| ||||| || Sbjct 418 TGATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGATAA 359 Query 36726 AAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCA 36785 || || | ||| |||||||| || | || | || ||||| | || || ||||||||| Sbjct 358 AAATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTCCA 299 Query 36786 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 36845 || | ||||| || || ||||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 298 TATAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAGCA 239 Query 36846 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 36905 ||||| ||||| | |||| | | |||||||| | | || ||||| || ||| Sbjct 238 ACAAAAGCAATAATAAATACAGAGGTAGCTGTTAATAAAGTTGGAATCATGCAAACTCCA 179 Query 36906 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 ||||| || | ||| | ||||| | |||||| |||| ||| ||||| || Sbjct 178 AACCAACCAATATATAATCGGTTATCTGTACTAGTAATCCATTCACAAAA 129 >seq251946 Length=233 Score = 118 bits (130), Expect = 3e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 36503 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGA 36562 ||| ||||| |||| || || || | || || || ||||||||| ||||| || | Sbjct 1 ACTTCCTTGACCAATTGGATATACAAGAAAAACTGCTGCTGCTGCTGCTACAGGTGCCGT 60 Query 36563 ATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 36622 |||| ||| | ||||| || | |||||||| | |||||| |||||||| | || || Sbjct 61 GAAAGCAACAGAGATCCATGGACGCATACCTAAACGATAACTTAGTTCCCACTCACGACC 120 Query 36623 CAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 36682 | ||| ||| || | | ||| || | |||||| | || ||| || || || || Sbjct 121 AATATAACAACAGACCCCTAATAAAAAATGTAGCACAATCAATTCATAAGGGCCACCATT 180 Query 36683 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGAC 36735 ||||||||| || || | | |||||||||||| ||||| || ||||||| || Sbjct 181 ATATAACCATTCATCTAAAGATGCAGCTTCCCAAATTGGATAAAAGTGAATAC 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150002328535912